BS12277.complete Sequence
1205 bp assembled on 2006-11-01
GenBank Submission: FJ637130
> BS12277.complete
GAAGTTATCAGTCGACATGGCGTCCGCAGGAAAGAAGGGCAAAAAGAATA
AAGGAACAGTTATCTCCTTGCAATCATTTCTATGTAATTCTGACGCTCCA
GTCGGAACAACCCAAGTCTCAAAAAAAATACGAAATTTAGATGGCGATGA
TAGCGATGATGGAAGTGGTACATTGCCGTTGGTTTATCAGCTTCCAACCG
CTCCGAGGGCAAATCGGATATTCGACGATAATTCTATTCCTCATAAAGCC
CCATTTATTGCTTATATCAATAATTTACCATTTGACGCAAATGAAGATGA
CCTCTACGAGTTCTTTGAAGGTATTAATTTAATATCTCTGAGACTACCAA
GAGAAGATGGCGAAAATGGTCGTTCCAGAGGCTTTGGCTATGTGGAGTTG
GAAAATCGAGAGGATTTAATTCATGTACTTAGCTTGCCAGACCCCTCTAT
TAAAGGTCGCCGCATTCGCATTGAGCTATCGAATGAAAACGACCAGCAAA
GCCGCCAAAAAAGTAATAGGCGGTTTGATGGTTTTGGAAATAATGGAGAT
AATAGGGATTCCGGAAATTGGAGGCGAGACAGCCAAAACAACGGCAGTAA
CTTTGGTTATTCTTCCAATTTTGAAAGAAGCTTTAATAGAGAGAGAAAAT
CTTTACCAGATAGAGATGATGTGAACACTCCTGGATCTTGGCGCACGAGC
GCAAGGCCGCAATCTATTGATACTTCCCCTACACGCAGAGAAGTTGAACA
AGTATCTGAAAAATATCGCGAAGGTCGAGTCAAAATAGCAGACAGATATT
CCCGAGAAGAGACATCCAAAGTTGAAGAAGAAAGGCCAAAATTGAATTTA
AAACCAAGAACTTTACCATTGCCAGATGTAAAGACAATTGAATTCGAAAA
ATGTGACGTTGATGAATTTAATTTGGATAAACAAGGCGGAACTTCATCAT
TAAACGTGTTTGGGTCTGCAAAACCGGTAGATACAGCAGCAAGGGAGTTG
GAGATTGAGCAAAGATTGGCTCTCGCTCGAAAACAGGATAAGGGGCGCAG
AGAACAGGGTTTAAATGAAAAACTTGCCGAGCTCCAGGTGGATAAAAATG
ATAATGAAAGTCTAAGTGCAACAGTTAGTTGGCGCACGAATCAGGACTAC
AAGGAAAGCGACAAAATTAATAAGTGTCCAGGTAACTAAAAGCTTTCTAG
ACCAT
BS12277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4B-RA | 1173 | CG10837-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
| eIF-4B-RB | 1380 | CG10837-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| eIF-4B-RF | 1179 | CG10837-PF | 1..1166 | 17..1182 | 5830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4B-RA | 1651 | CG10837-RA | 69..1243 | 17..1191 | 5875 | 100 | Plus |
| eIF-4B-RB | 1504 | CG10837-RB | 69..1235 | 17..1183 | 5835 | 100 | Plus |
| eIF-4B-RF | 1443 | CG10837-RF | 69..1234 | 17..1182 | 5830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27547685..27548849 | 1191..27 | 5825 | 100 | Minus |
| 3L | 28110227 | 3L | 27856774..27857938 | 1191..27 | 5825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:57:48 has no hits.
BS12277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:28 Download gff for
BS12277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4B-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:19 Download gff for
BS12277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4B-RA | 65..1253 | 7..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:41 Download gff for
BS12277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4B-RA | 69..1239 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:28 Download gff for
BS12277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4B-RA | 65..1253 | 7..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:57 Download gff for
BS12277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-4B-RA | 69..1239 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:57 Download gff for
BS12277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27856778..27857938 | 27..1187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:41 Download gff for
BS12277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 2902091..2903251 | 27..1187 | 100 | | Plus |
BS12277.pep Sequence
Translation from 16 to 1188
> BS12277.pep
MASAGKKGKKNKGTVISLQSFLCNSDAPVGTTQVSKKIRNLDGDDSDDGS
GTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYEFF
EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRI
RIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSS
NFERSFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKY
REGRVKIADRYSREETSKVEEERPKLNLKPRTLPLPDVKTIEFEKCDVDE
FNLDKQGGTSSLNVFGSAKPVDTAARELEIEQRLALARKQDKGRREQGLN
EKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPGN*
BS12277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-4B-PA | 390 | CG10837-PA | 1..390 | 1..390 | 2034 | 100 | Plus |
| eIF-4B-PF | 392 | CG10837-PF | 1..389 | 1..389 | 2028 | 100 | Plus |
| eIF-4B-PB | 459 | CG10837-PB | 1..389 | 1..389 | 2028 | 100 | Plus |
| eIF-4B-PE | 389 | CG10837-PE | 1..388 | 1..388 | 2022 | 100 | Plus |
