BS12278.complete Sequence
1847 bp assembled on 2009-12-07
GenBank Submission: KX804351
> BS12278.complete
GAAGTTATCAGTCGACATGAATCTGATCAACATGGACTCGGAAAACAGGG
TGGTGCTCAATGTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTG
AAGAAGATTCCGGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAA
CTATGATCCGATACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCT
TCGCACAAGTGCTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACG
GATGTGTGCGGTCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGA
CTCGAACCAAGTGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCG
ACACCCAGGAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAA
AAACCGTCCGAAGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTA
CTACAAAGGCACAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGT
CCTTGTTCGATGAGCCCTACAGTTCCAATGCAGCCAAGACTATTGGCGTG
GTTTCGGTGTTCTTCATCTGCATTTCGATCCTGTCGTTCTGCCTGAAGAC
CCATCCCGATATGCGGGTACCCATCGTCCGGAACATTACAGTGAAAACTG
CGAATGGAAGTAATGGCTGGTTTTTGGACAAAACGCAGACCAATGCGCAC
ATAGCCTTCTTCTATATCGAATGCGTGTGCAATGCCTGGTTTACCTTTGA
AATATTGGTGCGCTTTATCTCATCGCCGAACAAGTGGGAGTTCATCAAGT
CATCTGTTAACATCATAGACTACATAGCGACGCTTAGTTTTTATATCGAT
CTAGTGCTTCAGCGGTTCGCATCGCACCTGGAGAACGCTGACATCCTCGA
GTTCTTCTCGATCATCCGCATCATGCGTCTGTTCAAGCTGACGCGCCACT
CGTCCGGACTGAAGATCCTGATCCAGACGTTCCGGGCCTCGGCCAAGGAG
CTGACCCTGCTGGTGTTCTTCCTCGTCCTGGGCATCGTGATCTTCGCCAG
CCTTGTCTACTACGCGGAGCGCATCCAGCCCAATCCGCACAACGACTTCA
ACAGCATACCGCTGGGCCTGTGGTGGGCCCTGGTCACAATGACCACCGTC
GGCTACGGCGACATGGCCCCCAAAACCTACATCGGCATGTTCGTGGGCGC
CCTCTGCGCCCTGGCCGGCGTACTAACCATCGCACTGCCAGTGCCCGTCA
TCGTCAGCAACTTCGCCATGTACTACTCGCACACGCAGGCCAGGGCCAAA
CTGCCAAAGAAGCGGAGACGAGTGCTTCCCGTCGAGCAGCCGCGCCAGCC
CAGACTGCCAGGTGCCCCTGGTGGTGTCAGTGGTTGCGGTACCCCGGGCT
CGGGTCCCCACTCCGGTCCCATGGGATCCGGCGGTACTGGACCACGTCGC
ATGAACAATAAAACAAAGGACCTGGTCAGCCCCAAGTCAGTTGCTCAACT
TTTCGCAGGTCCGCTGGGCGCAAGCATTGTGGCCATGAGTCCCCGGACAA
TGCTGGATCTCAATCCTGCCCTGGCGATGGGCAAGCCTACGTTTCAGCCC
CGTATACCCACCCCCCTGGCAGCCACGCCCCCTCCCCCCGTGAGTTCCGC
TGGGGGGATGACAGCGTCTGGAATTGGAACTACTTCAGCCACTGGAGCCA
CTAGTGCACCACAACCAGCAACACCACTACCCAGCATTGCGGTGTCCACC
ACAGCGAGTGTGGGCAAGGATTTGGGCATCTCGACCACCACCACCACGGC
CCAGGAGACCAGCAAGAAGGCCTTCCTCTAAAAGCTTTCTAGACCAT
BS12278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shaw-RC | 1860 | CG2822-PC | 45..1860 | 16..1831 | 9080 | 100 | Plus |
| Shaw-RB | 1815 | CG2822-PB | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| Shaw-RE | 1797 | CG2822-PE | 1..1797 | 17..1831 | 8770 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shaw-RC | 2428 | CG2822-RC | 45..1861 | 16..1832 | 9085 | 100 | Plus |
| Shaw-RB | 2840 | CG2822-RB | 457..2273 | 16..1832 | 9085 | 100 | Plus |
| Shaw-RE | 4380 | CG2822-RE | 457..2255 | 16..1832 | 8780 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3722652..3723259 | 757..1364 | 3040 | 100 | Plus |
| 2L | 23513712 | 2L | 3726677..3727020 | 1489..1832 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 3722351..3722573 | 537..759 | 1115 | 100 | Plus |
| 2L | 23513712 | 2L | 3721380..3721589 | 16..225 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 3721820..3722017 | 341..538 | 990 | 100 | Plus |
| 2L | 23513712 | 2L | 3723633..3723764 | 1359..1490 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 3721640..3721762 | 221..343 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 9380049..9380257 | 1289..1081 | 490 | 82.3 | Minus |
| 2L | 23513712 | 2L | 9380430..9380595 | 1069..904 | 335 | 80.1 | Minus |
| 2L | 23513712 | 2L | 9384640..9384785 | 225..80 | 295 | 80.1 | Minus |
| 2L | 23513712 | 2L | 9381661..9381765 | 328..224 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:56:44 has no hits.
BS12278.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:26 Download gff for
BS12278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 46..1858 | 17..1829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:56 Download gff for
BS12278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RB | 458..2270 | 17..1829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:32 Download gff for
BS12278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RC | 46..1858 | 17..1829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:21 Download gff for
BS12278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shaw-RB | 458..2270 | 17..1829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:21 Download gff for
BS12278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3723636..3723764 | 1362..1490 | 100 | -> | Plus |
| 2L | 3726679..3727017 | 1491..1829 | 100 | | Plus |
| 2L | 3721381..3721589 | 17..225 | 100 | -> | Plus |
| 2L | 3721645..3721762 | 226..343 | 100 | -> | Plus |
| 2L | 3721823..3722017 | 344..538 | 100 | -> | Plus |
| 2L | 3722353..3722571 | 539..757 | 100 | -> | Plus |
| 2L | 3722653..3723256 | 758..1361 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:56 Download gff for
BS12278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3721381..3721589 | 17..225 | 100 | -> | Plus |
| arm_2L | 3721645..3721762 | 226..343 | 100 | -> | Plus |
| arm_2L | 3721823..3722017 | 344..538 | 100 | -> | Plus |
| arm_2L | 3722353..3722571 | 539..757 | 100 | -> | Plus |
| arm_2L | 3722653..3723256 | 758..1361 | 100 | -> | Plus |
| arm_2L | 3723636..3723764 | 1362..1490 | 100 | -> | Plus |
| arm_2L | 3726679..3727017 | 1491..1829 | 100 | | Plus |
BS12278.pep Sequence
Translation from 16 to 1830
> BS12278.pep
MNLINMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL
NEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVE
PCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELARKFGFEEDYYKGTI
SWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMR
VPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRF
ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSII
RIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYA
ERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALA
GVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRQPRLPGA
PGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLFAGPL
GASIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAATPPPPVSSAGGMTA
SGIGTTSATGATSAPQPATPLPSIAVSTTASVGKDLGISTTTTTAQETSK
KAFL*
BS12278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shaw-PC | 619 | CG2822-PC | 16..619 | 1..604 | 3168 | 100 | Plus |
| Shaw-PB | 604 | CG2822-PB | 1..604 | 1..604 | 3168 | 100 | Plus |
| Shaw-PE | 598 | CG2822-PE | 1..598 | 1..604 | 3124 | 99 | Plus |
| Shaw-PD | 510 | CG2822-PD | 1..491 | 1..491 | 2606 | 100 | Plus |
| Shaw-PA | 498 | CG2822-PA | 1..491 | 1..491 | 2606 | 100 | Plus |
