BS12279.complete Sequence
1550 bp assembled on 2006-11-01
GenBank Submission: FJ637131
> BS12279.complete
GAAGTTATCAGTCGACATGTCTACCTTTGGCGCTGAAGTGGATCAGGTTT
GGCCAGCGGTCACCGGTGATTCCCCGCATCTCACTAATTTCGGACGCAAA
TTGCTGAAGGATTGCCGCCAAGTGCAGAAACCAATCGGAGGATACGAAAA
TTTGGGCAATGTGATTAAATTGTCCGCGGAGTTTCCGCTGGAGTTCGGCG
TGAACAGTGTCAAAGTATACCGGCAATCTCCATCGCGGCTTGCCCGGATA
AATGAGGAAGTGGCATCCGCCTATCCATTGATACACGAACGTACATTGGG
CCTCTACTTGCAGTACTTGGAGCACAAGTGTCGTTGGGGCAACGCGGTGG
AAAAGCCCATCTACCGGAATTTATCGCTATGCGGATTTGTGCAACGTCTG
CTGGTAAAGCGTTGCGCCAGCTTCTTTGCGCGGAACGACAAGTACCTGCT
GGTGAGCGGAGAGTCCGGGGCCAGTGGCTTCGAAGCCGTGGGTACTCGGG
AGGAGAAGGCGCCTCTGGTGCTGGCCAACGTGCTCAGCTATGACGATATC
AAGCTCTCCGCCCTGCTTTCCGTGAGCTCCCGCACGGAGTTTGTCAATGA
GGGCGAACGAACCAATTGCGGTCACGTTGATCTGAACACGAAAACTTTGG
AACGTCACGGGGTTATTGTGGGCATGATTGGAGCCCGTCTGTCGCGACGT
AATCTAATGGAGTTCCAGGACATTGTAATCGCACGTCAGCAGAATACGCG
TGAAAGGGGCTACGGAATGGCATTGGATGAGCCGGCTACCACGCGTGATG
AGGACTATCGACGACTGTGGCGCGAGTTCTATGCCACACGGGATCTCATC
CACGGCCAGGCAGTCATTGACAATCAGCGTTTCGGACCATCGAAAAACAA
GATGGACGTGTTCGACAATCTGGTGATGAAGCGGCGTTACGCCATCAGCT
TCGACATGCTGCTGCTGGAGGCAGAGGCAAGGGCAAAACGCGTGAAAAAG
CTGGCGTACATCCATGTGGTGGGCTTCGGCTTGGGCGTGTGGAAGGCAGC
AGAACAGCAGGAGCGCATCTTCATGGAGACCTTCGAGCAGCGTATGCGCA
CGCTGGGCAACAGGCTCAATAACGTTGGCCTCGTGCACTTCTCCTGGTTT
TCGATCACACATTGCGGCGGTCTAAGCAACGGATCGCTGATAGAGATTCC
CGGGCATCCAAAGGATGGCATCAGGGTGCTCATTTCCAAGCGCAATCCAG
CACGAAAATTGAGTGATCCTGAGCACGCCGGAATGCTGCTGGTAGTCTCT
TACGCTTGGGATGGAAACGCCCTGCCGGGTAATGAATTCTGGATGAAAAT
GCTGCAGTCCACAGGTGACTCCTCGACGGCCTGCTCCACGTTGGTGGCCG
AGCTGCACAATCCGTACATAAACACGAAATTCTGCAATGGAGGCAACCTG
CACATCGCCTCACCGGAGCACGGGGTGCTCCACATAGCCGAATATGCCAA
GCGGGTGATTCGGAGCGAGAGTGACGCCTTATGAAAGCTTTCTAGACCAT
BS12279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2909-RA | 1518 | CG2909-PA | 1..1518 | 17..1534 | 7575 | 99.9 | Plus |
| CG3568-RA | 1527 | CG3568-PA | 1033..1095 | 1010..1072 | 180 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2909-RA | 2018 | CG2909-RA | 154..1672 | 16..1534 | 7580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10327065..10328072 | 338..1345 | 5025 | 99.9 | Plus |
| X | 23542271 | X | 10328411..10328600 | 1345..1534 | 950 | 100 | Plus |
| X | 23542271 | X | 10326617..10326794 | 16..193 | 890 | 100 | Plus |
| X | 23542271 | X | 10326857..10327004 | 192..339 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:27:50 has no hits.
BS12279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:31 Download gff for
BS12279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 1..1518 | 17..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:21 Download gff for
BS12279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 143..1665 | 10..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:00 Download gff for
BS12279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 155..1671 | 17..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:31 Download gff for
BS12279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 143..1665 | 10..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:32 Download gff for
BS12279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 155..1671 | 17..1533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:32 Download gff for
BS12279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10326618..10326794 | 17..193 | 100 | -> | Plus |
| X | 10326859..10327003 | 194..338 | 100 | -> | Plus |
| X | 10327066..10328072 | 339..1345 | 99 | -> | Plus |
| X | 10328412..10328599 | 1346..1533 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:00 Download gff for
BS12279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10220651..10220827 | 17..193 | 100 | -> | Plus |
| arm_X | 10220892..10221036 | 194..338 | 100 | -> | Plus |
| arm_X | 10221099..10222105 | 339..1345 | 99 | -> | Plus |
| arm_X | 10222445..10222632 | 1346..1533 | 100 | | Plus |
BS12279.pep Sequence
Translation from 16 to 1533
> BS12279.pep
MSTFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVI
KLSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQY
LEHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGES
GASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTN
CGHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYG
MALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFD
NLVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQER
IFMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKD
GIRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTG
DSSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRS
ESDAL*
BS12279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2909-PA | 505 | CG2909-PA | 1..505 | 1..505 | 2635 | 100 | Plus |
| CG3568-PA | 508 | CG3568-PA | 24..507 | 11..498 | 1277 | 51.8 | Plus |
