BS12280.complete Sequence
1517 bp assembled on 2006-11-01
GenBank Submission: FJ637132
> BS12280.complete
GAAGTTATCAGTCGACATGATGCCATACCTTCGCCGCCTTTTCAGCCAGG
AGCTCTCTCCGGCTGCTCAGGGCGATTTTCTGGGCTGCTTGCAGCAGGCG
CCCAGTGTCCTGGCCACCGGATTCCCTGGAGCACCCGCACTGGAGAGCCT
AAGTTGGTTACACAACCTAGCGCCGTGCTTCCCGCTGCGAGGCGATCAAA
TTCAGGTCATCCACGAGCCAAAGCACTTCTACGAAACGCTGGTGCAACGA
ATCGGTCAGGCCAAACGCCGTATAGTGCTGGCCAGTTTGTACCTGGGCAC
TGGGCAACTGGAGAACGCAATGGTTCAGACGTTGCGTCACAGCCTGGAGC
AACAGTCTGCCCTGAGGCTCAACGTGCTGTTGGACTTTACACGCGGCACG
CGGGGAACCCTCAACTCCAAGACCATGTTGCTACCCCTGGTCCGCGACTT
TGCGAGCCAGGTGCAGCTATCCCTGTACCATACGCCTGATCTGCGCGGGA
TGACAAAGCGACTAGCACCGCCACGGTGGAATGAGCTTCTCGGACTACAG
CACATGAAGGTCTACCTGTTCGACGATGCCGTGATCATATCAGGCGCCAA
TCTGTCCAATGACTACTTCACCAACCGGCAGGATCGATACATACTCATTG
AGGACAAACCGTTGGCGGATTTCTATGCGCAGTTCATCGAACGCGTTCAA
GAGTTTAGTTTGGCAGTGGCGCCAGATGCCAGCGAGGGACTGCACCGCAA
CTGGCGAATACTGCCGTACGAGGGCACCAAGGAGCAGTTTATCCAGCTTG
CCCGTAAACGTATTTCCGATTTAGTGCAGGAGACGTTTCAGCGGCAGGCG
CGAACTAAAGAGCAGAATCCGCAGGCAGACACATGGATTTTTCCGCTGCT
TGAGATGGGCCAGATCGGCATTCATCACGACAGCGTGGTGACCAAGCGGC
TGCTCTCCAACTGCTTGTCTGGATCACGGCTGAAACTGGCCACCGGGTAC
TTCAACCTGACGCAGGAGTACATGGACACGCTCACGCACAAGTGCCTGGC
CCAATGCAGCATACTGATGGCTCATCCAAATGCAAACGGCTTTCAGGGTG
CCAAAGGACCAGCGGGCGGAATTCCGGCTGCCTACACACTGATAGCCAAG
AGTTTCTACGAGAGCCTGGTCCGCCGGAAGCAAAACCACCGCGTTAACTT
CTTCGAGTACGAAAAGCCCGGCTGGACGTACCATGCTAAAGGACTGTGGT
ACTACCTGCCAGAGGCAATACTGCCAAACCTCACGCTGATCGGCTCTTCG
AACTTTGGCGAGCGATCGGTGAACCGCGATCTGGAGACACAGGTGTGCCT
TGTGACGGCTAATAAGGATCTAAGCCAGCGGCTGCAGGCGGAAGCTGACC
GGCTGTACGATCTGTCACAGACGGCGGAGCGGGAAATCGTCCAACGACCC
GTTCCGCGATGGGTCCAGGCCGTCGTTCGCATATTCAGGAATTTCTTCTA
GAAGCTTTCTAGACCAT
BS12280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-RA | 1485 | CG7718-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-RA | 1921 | CG7718-RA | 249..1733 | 17..1501 | 7425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18744728..18745793 | 1082..17 | 5330 | 100 | Minus |
| 3R | 32079331 | 3R | 18744251..18744670 | 1501..1082 | 2100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:22 has no hits.
BS12280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:33 Download gff for
BS12280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 1..1485 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:24 Download gff for
BS12280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1740 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:45 Download gff for
BS12280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1733 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:33 Download gff for
BS12280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1740 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:09 Download gff for
BS12280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1733 | 17..1501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:09 Download gff for
BS12280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18744251..18744670 | 1082..1501 | 100 | <- | Minus |
| 3R | 18744729..18745793 | 17..1081 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:45 Download gff for
BS12280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14569973..14570392 | 1082..1501 | 100 | <- | Minus |
| arm_3R | 14570451..14571515 | 17..1081 | 100 | | Minus |
BS12280.pep Sequence
Translation from 16 to 1500
> BS12280.pep
MMPYLRRLFSQELSPAAQGDFLGCLQQAPSVLATGFPGAPALESLSWLHN
LAPCFPLRGDQIQVIHEPKHFYETLVQRIGQAKRRIVLASLYLGTGQLEN
AMVQTLRHSLEQQSALRLNVLLDFTRGTRGTLNSKTMLLPLVRDFASQVQ
LSLYHTPDLRGMTKRLAPPRWNELLGLQHMKVYLFDDAVIISGANLSNDY
FTNRQDRYILIEDKPLADFYAQFIERVQEFSLAVAPDASEGLHRNWRILP
YEGTKEQFIQLARKRISDLVQETFQRQARTKEQNPQADTWIFPLLEMGQI
GIHHDSVVTKRLLSNCLSGSRLKLATGYFNLTQEYMDTLTHKCLAQCSIL
MAHPNANGFQGAKGPAGGIPAAYTLIAKSFYESLVRRKQNHRVNFFEYEK
PGWTYHAKGLWYYLPEAILPNLTLIGSSNFGERSVNRDLETQVCLVTANK
DLSQRLQAEADRLYDLSQTAEREIVQRPVPRWVQAVVRIFRNFF*
BS12280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-PA | 494 | CG7718-PA | 1..494 | 1..494 | 2574 | 100 | Plus |
