BS12281.complete Sequence
515 bp assembled on 2006-11-01
GenBank Submission: FJ637133
> BS12281.complete
GAAGTTATCAGTCGACATGAAGGGCGGCACCTTTCGCAACACGCAGTGGG
ATCCCACGCTGCTGTCCTCACAGATTGTGTCCATGCAGTTCTGCGTGTAC
TTCACCCTTGGCCTACTCGTCTTCGTGGCCAACAAGTTGTCCGGGGACAA
CTATAGTCTGGATCACTTGTTCGAATACCATGAGATCCACATCTACGACA
TGGGTGGCCGCCTGGTGATCTGCGCATTTGTTTTAAATGCGTTCTTAGCC
TCCCTGGCACTGTGGTGCATTGTGAGAAGAGCCAAGCTCTGTCTGGACTT
TAGTTGCACCTTCCACGTGCTGCATTTGCTGATCTGCTGGTGGTACAACC
GCTCCTTTCCCGCGAACGCATCGTGGTGGCTACTGAATGTCATCACCGGC
ACAATAATGTGCATAGGCGGCGAGTTTCTCTGCCTGCAGACCGAGATGAA
GGAGATCCCAGTGGGCTATGCGGCCCTCAATCAAAAGTCGGACGTCTGAA
AGCTTTCTAGACCAT
BS12281.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11753-RA | 483 | CG11753-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
| CG11753-RC | 480 | CG11753-PC | 1..480 | 17..499 | 2335 | 99.4 | Plus |
| CG11753-RB | 480 | CG11753-PB | 1..480 | 17..499 | 2335 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11753-RA | 699 | CG11753-RA | 110..593 | 16..499 | 2420 | 100 | Plus |
| CG11753-RC | 801 | CG11753-RC | 215..695 | 16..499 | 2340 | 99.4 | Plus |
| CG11753-RB | 696 | CG11753-RB | 110..590 | 16..499 | 2340 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8653544..8653741 | 302..499 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 8653120..8653286 | 16..182 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 8653356..8653477 | 182..303 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:53:35 has no hits.
BS12281.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:34 Download gff for
BS12281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:26 Download gff for
BS12281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 98..590 | 10..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:21 Download gff for
BS12281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 111..592 | 17..498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:35 Download gff for
BS12281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 98..590 | 10..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:49 Download gff for
BS12281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 111..592 | 17..498 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:49 Download gff for
BS12281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8653121..8653285 | 17..181 | 100 | -> | Plus |
| 3R | 8653356..8653477 | 182..303 | 100 | -> | Plus |
| 3R | 8653546..8653740 | 304..498 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:21 Download gff for
BS12281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4478843..4479007 | 17..181 | 100 | -> | Plus |
| arm_3R | 4479078..4479199 | 182..303 | 100 | -> | Plus |
| arm_3R | 4479268..4479462 | 304..498 | 100 | | Plus |
BS12281.pep Sequence
Translation from 16 to 498
> BS12281.pep
MKGGTFRNTQWDPTLLSSQIVSMQFCVYFTLGLLVFVANKLSGDNYSLDH
LFEYHEIHIYDMGGRLVICAFVLNAFLASLALWCIVRRAKLCLDFSCTFH
VLHLLICWWYNRSFPANASWWLLNVITGTIMCIGGEFLCLQTEMKEIPVG
YAALNQKSDV*
BS12281.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11753-PA | 160 | CG11753-PA | 1..160 | 1..160 | 872 | 100 | Plus |
| CG11753-PC | 159 | CG11753-PC | 1..159 | 1..160 | 855 | 99.4 | Plus |
| CG11753-PB | 159 | CG11753-PB | 1..159 | 1..160 | 855 | 99.4 | Plus |
