BS12282.complete Sequence
407 bp assembled on 2009-02-12
> BS12282.complete
GAAGTTATCAGTCGACATGACGGAAGCAGCGGAAATCAACGGCAGAGAAG
AAGTGGAGGATGACGAGCAGGATAAAAAGCAAAAGAAATCCGATGTGAAA
CGACATGACGACGGCGCCGCAGATTTGGAACGTGTGACGGATTATGCCGA
GGAAAAGGAGATCTCTGCGGACAATATATCCAGCGCCGTGGAGCAGTTTG
GCAACCAGCGTAACAAGGAGAACGAACTGCGAGTAGCCAAAGAGAAGGAG
CTCCAGAAGGTCCAAGTCAAGAAGGAGGACATTGAACTGATTATGAACGA
GCTGCTGGTTAGCAAGGCGCATGCCGAGAAAGTGCTCCGCGAGCAGAGCG
GCGATGTGGTGGCCGCCTTGGAAGCCATTATCAGCAATTGAAAGCTTTCT
AGACCAT
BS12282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9922-RB | 375 | CG9922-PB | 1..375 | 17..391 | 1860 | 99.7 | Plus |
| CG9922-RA | 375 | CG9922-PA | 1..375 | 17..391 | 1860 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9922-RB | 1006 | CG9922-RB | 470..844 | 17..391 | 1860 | 99.7 | Plus |
| CG9922-RA | 626 | CG9922-RA | 90..464 | 17..391 | 1860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14035444..14035551 | 292..185 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 14035824..14035929 | 122..17 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 14035180..14035278 | 391..293 | 480 | 99 | Minus |
| 3R | 32079331 | 3R | 14035620..14035684 | 185..121 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:03 has no hits.
BS12282.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:22 Download gff for
BS12282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9922-RA | 237..610 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:47 Download gff for
BS12282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9922-RA | 90..463 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:44 Download gff for
BS12282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9922-RA | 90..463 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:44 Download gff for
BS12282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14035181..14035278 | 293..390 | 98 | <- | Minus |
| 3R | 14035444..14035551 | 185..292 | 100 | <- | Minus |
| 3R | 14035621..14035682 | 123..184 | 100 | <- | Minus |
| 3R | 14035824..14035929 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:47 Download gff for
BS12282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9860903..9861000 | 293..390 | 98 | <- | Minus |
| arm_3R | 9861166..9861273 | 185..292 | 100 | <- | Minus |
| arm_3R | 9861343..9861404 | 123..184 | 100 | <- | Minus |
| arm_3R | 9861546..9861651 | 17..122 | 100 | | Minus |
BS12282.pep Sequence
Translation from 16 to 390
> BS12282.pep
MTEAAEINGREEVEDDEQDKKQKKSDVKRHDDGAADLERVTDYAEEKEIS
ADNISSAVEQFGNQRNKENELRVAKEKELQKVQVKKEDIELIMNELLVSK
AHAEKVLREQSGDVVAALEAIISN*
BS12282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9922-PB | 124 | CG9922-PB | 1..124 | 1..124 | 605 | 100 | Plus |
| CG9922-PA | 124 | CG9922-PA | 1..124 | 1..124 | 605 | 100 | Plus |
