BS12285.complete Sequence
1031 bp assembled on 2006-11-01
GenBank Submission: FJ637134
> BS12285.complete
GAAGTTATCAGTCGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATAC
TGCTGGCCGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGGC
ACTTTGGCCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCAA
GCAGACGGAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCCA
AGCTGGCCGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTCC
CAGCGCCTAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGCA
GGAGATTGACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCGG
CCATTATCAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAGC
GCTGGTGGAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCAT
CGAGAAAGTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATGC
CGAATGCAGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAACT
CTGGAGGAGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTACG
CGCCCGTGATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGCA
TCAAAGGTCAAACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAAG
ACGGAGGAGTCCGTGTGGGTCTTGCAAGACAGCAAAACCGTGATGATCAC
TCTTGATAAGATCAATAAGATGAACTGGTGGAGCCGCCTGGTCACAACCG
ATCCAGAGATCTCGACGCGCAAGATCAATCCAGAGTCTTCCAAGCTTTCT
GATCTGGATGGGGAGACTCGCAGTATGGTGGAGAAGATGATGTATGATCA
GCGACAGAAGGAGTTGGGTCTTCCCACCAGCGAGGATCGCAAAAAACAGG
ACATACTTGAGAAATTTAAGCAACAGCATCCTGAGATGGACTTCTCCAAG
TGTAAATTCAATTAAAAGCTTTCTAGACCAT
BS12285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudC-RB | 999 | CG9710-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
| nudC-RA | 999 | CG9710-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudC-RB | 1622 | CG9710-RB | 510..1509 | 16..1015 | 5000 | 100 | Plus |
| nudC-RA | 1238 | CG9710-RA | 126..1125 | 16..1015 | 5000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16818905..16819304 | 564..963 | 2000 | 100 | Plus |
| 3L | 28110227 | 3L | 16808693..16808978 | 90..375 | 1430 | 100 | Plus |
| 3L | 28110227 | 3L | 16809168..16809357 | 376..565 | 950 | 100 | Plus |
| 3L | 28110227 | 3L | 16808544..16808619 | 16..91 | 380 | 100 | Plus |
| 3L | 28110227 | 3L | 16819368..16819419 | 964..1015 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:23:02 has no hits.
BS12285.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:15 Download gff for
BS12285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:27 Download gff for
BS12285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 124..1120 | 17..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:49 Download gff for
BS12285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 127..1123 | 17..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:15 Download gff for
BS12285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 118..1125 | 9..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:52 Download gff for
BS12285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudC-RA | 127..1123 | 17..1013 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:52 Download gff for
BS12285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16809168..16809357 | 376..565 | 100 | -> | Plus |
| 3L | 16808545..16808619 | 17..91 | 100 | -> | Plus |
| 3L | 16808695..16808978 | 92..375 | 100 | -> | Plus |
| 3L | 16818907..16819304 | 566..963 | 100 | -> | Plus |
| 3L | 16819368..16819417 | 964..1013 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:49 Download gff for
BS12285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16802268..16802457 | 376..565 | 100 | -> | Plus |
| arm_3L | 16801645..16801719 | 17..91 | 100 | -> | Plus |
| arm_3L | 16801795..16802078 | 92..375 | 100 | -> | Plus |
| arm_3L | 16812007..16812404 | 566..963 | 100 | -> | Plus |
| arm_3L | 16812468..16812517 | 964..1013 | 100 | | Plus |
BS12285.pep Sequence
Translation from 16 to 1014
> BS12285.pep
MAAEEGKFDNILLAVAEKHHGGVPEFLGTLASFLRRKTDFFTGAKQTEWE
KLLLDVFNKESKLAVTENYEKIKAREASQRLKAEKERAERKARKQEIDDN
KICDITDEEAAAIIKEEETKKRQQLLDSAGGEPSASNRDGISKPIEKVDD
ESDKSELGKLMPNAGNGCTLENYTWTQTLEEVELKIPFNLTFGLRARDLV
ISIGKKSLKVGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKIN
KMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKEL
GLPTSEDRKKQDILEKFKQQHPEMDFSKCKFN*
BS12285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudC-PB | 332 | CG9710-PB | 1..332 | 1..332 | 1703 | 100 | Plus |
| nudC-PA | 332 | CG9710-PA | 1..332 | 1..332 | 1703 | 100 | Plus |
| CG31251-PA | 306 | CG31251-PA | 23..258 | 26..295 | 194 | 27.4 | Plus |
