BS12288.complete Sequence
1625 bp assembled on 2007-10-17
GenBank Submission: FJ637135
> BS12288.complete
GAAGTTATCAGTCGACATGATTCGCATCCTAGTTGGAGTGATTTGTGCGG
TCCTTTGGTCGCCGGTTAGCCAGGCTCTAACCCCTGGCTTGCAGGTGGCC
AAGCAGTGGAAACTCCTGCGCTATAACTTCGAACCTCAGGCTCCGGTCTC
CGATCCTAATTTCTATAATCCTCAAAATGTTCTCATCACCGGCCTGGCTG
TTACGGATGATCGGATATTTGTGGCCACACCAAAGCTCTTCTCAGGAGTG
CCCTCGACTGTGAGCTGGGTTTCCAAGGCCCAGTTTGGGGATTCCCCCAC
CCTGAACGCCTTTCCCGATTGGACATTCTCCAACACAGGACGCAGTGACT
TCAACTGCAGCGATCTCATCCTGACTTCGGTTTACCGCCTGCGTGTGGAT
TCCTGCAATCGCATTTGGCTGCTGGATGCTGGAATATCGAGATCCCTGGA
GGATTACGAAATCACTTGCCCGCCAAAGATCTTGGTCGTGGATCTGGCGA
CGGATCGAGTGGTGAGACGTATTGATTTTCCTCCGGAGGTCCTGCGAGGA
GAGTCCCTGTTCACCAACATGGTGATTGATGAGACGACGGCCAAGGGATG
CGATGATGTGTTCGTCTATATTACCGACACCGTGGAGCCGGGAATTATTG
TGTACGACAGTGGAAAGGACGTCACCTGGCGGGTATCCCATCCAGCCATG
TATCCTGATCCGGACTTCGCACAGTCCGAGATTCATGAGCACCGCTTTGT
TCTGATGGATGGAGTGGTCGGTTTGACTTTCGATGAGCGCACCGGTGTGG
TTTACTTCCAGCCATTGGCCACGGATAGAGTTTTCTCCGTGCATAAGAAT
GTCCTGCGTGCGGGTCCTTTGCCAGATGGCAAAATGCTGGATGTGAAGCT
GGTGGGCAAGAAGAGCTCCCAGGGCATTGGCCTCGCCGTATCCCCGTTCG
ACAGCAGCCTGATCTTCAGTCCCCTGAGTGAAACAGCCATCGCCTCGTGG
AATCCAACGACAAACCAGCAATCGGTATTGGCCTTCGATCGCGATCAGTT
GCAGTTTGTGGCCGATATCACCACCACAAAATCGGAGCCGGGTGTAATCT
ATGCCATAGCCTCGAAGTTCCATCGCTTCTTCCTCAAGAACCTGAATCCC
AATGAGTTTAACAATCGCATTGTTAGGCTAGAACTGCCCGCTGGGAACTC
GCTGCTGGGTCATCGAGTCGCCCTACCCGCACCACCCACTCACAATAGTT
TGTTGAACTACGGCGTTTTCAATACTCACGGTCAGGCCTCGACGAATGCC
CTGCAAACGTACTTCACCAGTCCGGCGCTGACCACGCCCTTTACGACCAA
ATCGCCCTTTAAGTTCGAGACCGGCGGCATTGTCAACTATTCTGCTCGCA
ATCCGTTTACCGCTTTGAATCAGGGAGAGGCCTTCCCGCCCAGCAAGGCG
ACCAGGGACAACTTCCAGCGGTCCTATTTGGACACCCTGGTGGGCACCAC
CTCTCCGGCGGCCACCACCCGAGTGGTTTCGGTGCCACCCACCGCCTTCA
GCGGCCGCCACAGTGGTTACTACTATCAGCGGACCACGAGGTCGGTGGAT
CAGCAGTGAAAGCTTTCTAGACCAT
BS12288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e-RA | 1593 | CG9792-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e-RA | 1844 | CG9792-RA | 161..1757 | 16..1612 | 7985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13410791..13411603 | 828..16 | 4065 | 100 | Minus |
| 3R | 32079331 | 3R | 13409630..13410415 | 1612..827 | 3930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:05:09 has no hits.
BS12288.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:48 Download gff for
BS12288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e-RA | 1..1593 | 17..1609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:41 Download gff for
BS12288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e-RA | 153..1761 | 8..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:37 Download gff for
BS12288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e-RA | 160..1751 | 17..1608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:53 Download gff for
BS12288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e-RA | 160..1751 | 17..1608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:28 Download gff for
BS12288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e-RA | 162..1753 | 17..1608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:28 Download gff for
BS12288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13409634..13410413 | 829..1608 | 100 | <- | Minus |
| 3R | 13410791..13411602 | 17..828 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:37 Download gff for
BS12288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9235356..9236135 | 829..1608 | 100 | <- | Minus |
| arm_3R | 9236513..9237324 | 17..828 | 100 | | Minus |
BS12288.pep Sequence
Translation from 16 to 1608
> BS12288.pep
MIRILVGVICAVLWSPVSQALTPGLQVAKQWKLLRYNFEPQAPVSDPNFY
NPQNVLITGLAVTDDRIFVATPKLFSGVPSTVSWVSKAQFGDSPTLNAFP
DWTFSNTGRSDFNCSDLILTSVYRLRVDSCNRIWLLDAGISRSLEDYEIT
CPPKILVVDLATDRVVRRIDFPPEVLRGESLFTNMVIDETTAKGCDDVFV
YITDTVEPGIIVYDSGKDVTWRVSHPAMYPDPDFAQSEIHEHRFVLMDGV
VGLTFDERTGVVYFQPLATDRVFSVHKNVLRAGPLPDGKMLDVKLVGKKS
SQGIGLAVSPFDSSLIFSPLSETAIASWNPTTNQQSVLAFDRDQLQFVAD
ITTTKSEPGVIYAIASKFHRFFLKNLNPNEFNNRIVRLELPAGNSLLGHR
VALPAPPTHNSLLNYGVFNTHGQASTNALQTYFTSPALTTPFTTKSPFKF
ETGGIVNYSARNPFTALNQGEAFPPSKATRDNFQRSYLDTLVGTTSPAAT
TRVVSVPPTAFSGRHSGYYYQRTTRSVDQQ*
BS12288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e-PA | 530 | CG9792-PA | 1..530 | 1..530 | 2773 | 100 | Plus |
| yellow-b-PB | 453 | CG17914-PB | 1..389 | 1..386 | 381 | 27.6 | Plus |
| yellow-b-PA | 453 | CG17914-PA | 1..389 | 1..386 | 381 | 27.6 | Plus |
| yellow-h-PA | 463 | CG1629-PA | 53..448 | 25..414 | 378 | 27.1 | Plus |
| yellow-d-PA | 432 | CG9889-PA | 83..410 | 66..390 | 375 | 28.2 | Plus |
