BS12292.complete Sequence
587 bp assembled on 2006-11-01
GenBank Submission: FJ637137
> BS12292.complete
GAAGTTATCAGTCGACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGATTG
CCAGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATCGAG
GCCATCATTGCCGAGAAGTTCCCCGCCGGCCAGTCCTACGAGGATGTGCT
CAAGGACGGTCAGGTGCTGTGCAAACTGATCAACGTGCTGTCGCCCAATG
CCGTGCCCAAGGTCAACTCCTCGGGCGGCCAGTTCAAGTTCATGGAGAAC
ATCAACAACTTCCAGAAGGCCCTGAAGGAGTACGGTGTGCCCGACATCGA
TGTCTTCCAGACCGTCGATCTGTACGAGAAGAAGGATATTGCCAACGTTA
CCAACACCATCTTCGCTTTGGGCCGTGCCACCTACAAGCATGCCGACTTC
AAGGGTCCCTTCCTGGGCCCCAAGCCCGCCGATGAGTGCAAGCGCGATTT
CACCGAAGAGCAGCTGAAGGCTGGCCAGACCATTGTGGGTCTGCAGGCCG
GTTCCAACAAGGGAGCCACCCAGGCTGGCCAGAACCTCGGCGCTGGCCGC
AAGATCCTGCTCGGCAAGTAAAAGCTTTCTAGACCAT
BS12292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-RA | 555 | CG4696-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
| Mp20-RC | 570 | CG4696-PC | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-RA | 879 | CG4696-RA | 72..628 | 15..571 | 2785 | 100 | Plus |
| Mp20-RC | 693 | CG4696-RC | 72..625 | 15..568 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13246915..13247249 | 45..379 | 1675 | 100 | Plus |
| 2R | 25286936 | 2R | 13247317..13247508 | 380..571 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:10:59 has no hits.
BS12292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:18 Download gff for
BS12292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RB | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:06 Download gff for
BS12292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 85..648 | 7..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:25 Download gff for
BS12292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 74..626 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:19 Download gff for
BS12292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RB | 64..627 | 7..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:45 Download gff for
BS12292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 74..626 | 17..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:45 Download gff for
BS12292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13246743..13246772 | 17..46 | 100 | -> | Plus |
| 2R | 13246917..13247249 | 47..379 | 100 | -> | Plus |
| 2R | 13247317..13247506 | 380..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:25 Download gff for
BS12292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9134248..9134277 | 17..46 | 100 | -> | Plus |
| arm_2R | 9134422..9134754 | 47..379 | 100 | -> | Plus |
| arm_2R | 9134822..9135011 | 380..569 | 100 | | Plus |
BS12292.pep Sequence
Translation from 16 to 570
> BS12292.pep
MSLERAVRAKIASKRNPEMDKEAQEWIEAIIAEKFPAGQSYEDVLKDGQV
LCKLINVLSPNAVPKVNSSGGQFKFMENINNFQKALKEYGVPDIDVFQTV
DLYEKKDIANVTNTIFALGRATYKHADFKGPFLGPKPADECKRDFTEEQL
KAGQTIVGLQAGSNKGATQAGQNLGAGRKILLGK*
BS12292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-PA | 184 | CG4696-PA | 1..184 | 1..184 | 945 | 100 | Plus |
| Mp20-PC | 189 | CG4696-PC | 1..184 | 1..184 | 945 | 100 | Plus |
| CG5023-PA | 169 | CG5023-PA | 4..159 | 15..171 | 441 | 53.5 | Plus |
| Chd64-PC | 175 | CG14996-PC | 3..173 | 8..178 | 364 | 43.7 | Plus |
| Chd64-PB | 188 | CG14996-PB | 18..186 | 10..178 | 362 | 44.2 | Plus |
