Clone BS12313 Report

Search the DGRC for BS12313

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:123
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptp24-1-RA
Protein status:BS12313.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12313.complete Sequence

665 bp assembled on 2006-11-01

GenBank Submission: FJ637138

> BS12313.complete
GAAGTTATCAGTCGACATGAACACACAAATCGTTGTATTTGCGGTAGCTC
TGATGATGCACTGCATCTCTGCCGTCGAATTCACCTTCGATCTGGCCGAT
AACGCGGTGGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTA
CTTTGAGTTCCAGGTGTCGGCCGGTGGCCAATTGGACGTGGACGTCACCC
TGAAGGATCCGCAGGGCAAGGTCATCTACAGTCTGGAGAAGGCCACCTTC
GATAGTCATCAGTTCGTTGCCGAGACAACGGGCGTGTATACCGCTTGCTT
TGGCAATCAATTCTCGGCCTTCTCGCACAAGATCGTCTACGTGGACTTCC
AAGTGGGCGAGGAGCCGGCTCTGCCCGGTGTGGATGAACATGCCACGGTG
CTCACACAGATGGAGACATCGTCGCAGGCGATTCACAAGGGCCTCAACGA
CATCCTGGACGCCCAGACGCATCATCGACTGAGGGAGGCGCAAGGTCGCA
AGCGGGCCGAAGATCTCAATCAGCGGGTTATGGTCTGGTCATCCCTGGAG
ACGGCCGCAGTCATCGTGATCGGTCTCGTCCAGATTATGGTGCTGAGGAA
CTTCTTTACGGACCGAAAGCCCAGCCAGGCACACTACGGGCGGCTGTAGA
AGCTTTCTAGACCAT

BS12313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-RB 633 CG1967-PB 1..633 17..649 3165 100 Plus
p24-1-RA 633 CG1967-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-RB 1101 CG1967-RB 187..821 16..650 3175 100 Plus
p24-1-RA 1541 CG1967-RA 187..821 16..650 3175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11851629..11852263 650..16 3175 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:56:36 has no hits.

BS12313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:20 Download gff for BS12313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:08 Download gff for BS12313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 172..806 16..650 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:28 Download gff for BS12313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 188..820 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:20 Download gff for BS12313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 172..806 16..650 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:47 Download gff for BS12313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 188..820 17..649 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:47 Download gff for BS12313.complete
Subject Subject Range Query Range Percent Splice Strand
X 11851630..11852262 17..649 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:28 Download gff for BS12313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11745663..11746295 17..649 100   Minus

BS12313.pep Sequence

Translation from 16 to 648

> BS12313.pep
MNTQIVVFAVALMMHCISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQV
SAGGQLDVDVTLKDPQGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFS
AFSHKIVYVDFQVGEEPALPGVDEHATVLTQMETSSQAIHKGLNDILDAQ
THHRLREAQGRKRAEDLNQRVMVWSSLETAAVIVIGLVQIMVLRNFFTDR
KPSQAHYGRL*

BS12313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-PB 210 CG1967-PB 1..210 1..210 1077 100 Plus
p24-1-PA 210 CG1967-PA 1..210 1..210 1077 100 Plus
CHOp24-PB 208 CG3564-PB 7..202 4..197 238 27 Plus
CHOp24-PA 208 CG3564-PA 7..202 4..197 238 27 Plus
opm-PA 242 CG9053-PA 33..227 21..197 194 31.6 Plus