BS12313.complete Sequence
665 bp assembled on 2006-11-01
GenBank Submission: FJ637138
> BS12313.complete
GAAGTTATCAGTCGACATGAACACACAAATCGTTGTATTTGCGGTAGCTC
TGATGATGCACTGCATCTCTGCCGTCGAATTCACCTTCGATCTGGCCGAT
AACGCGGTGGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTA
CTTTGAGTTCCAGGTGTCGGCCGGTGGCCAATTGGACGTGGACGTCACCC
TGAAGGATCCGCAGGGCAAGGTCATCTACAGTCTGGAGAAGGCCACCTTC
GATAGTCATCAGTTCGTTGCCGAGACAACGGGCGTGTATACCGCTTGCTT
TGGCAATCAATTCTCGGCCTTCTCGCACAAGATCGTCTACGTGGACTTCC
AAGTGGGCGAGGAGCCGGCTCTGCCCGGTGTGGATGAACATGCCACGGTG
CTCACACAGATGGAGACATCGTCGCAGGCGATTCACAAGGGCCTCAACGA
CATCCTGGACGCCCAGACGCATCATCGACTGAGGGAGGCGCAAGGTCGCA
AGCGGGCCGAAGATCTCAATCAGCGGGTTATGGTCTGGTCATCCCTGGAG
ACGGCCGCAGTCATCGTGATCGGTCTCGTCCAGATTATGGTGCTGAGGAA
CTTCTTTACGGACCGAAAGCCCAGCCAGGCACACTACGGGCGGCTGTAGA
AGCTTTCTAGACCAT
BS12313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-RB | 633 | CG1967-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
p24-1-RA | 633 | CG1967-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-RB | 1101 | CG1967-RB | 187..821 | 16..650 | 3175 | 100 | Plus |
p24-1-RA | 1541 | CG1967-RA | 187..821 | 16..650 | 3175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11851629..11852263 | 650..16 | 3175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:56:36 has no hits.
BS12313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:20 Download gff for
BS12313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:08 Download gff for
BS12313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 172..806 | 16..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:28 Download gff for
BS12313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 188..820 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:20 Download gff for
BS12313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 172..806 | 16..650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:47 Download gff for
BS12313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 188..820 | 17..649 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:47 Download gff for
BS12313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11851630..11852262 | 17..649 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:28 Download gff for
BS12313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11745663..11746295 | 17..649 | 100 | | Minus |
BS12313.pep Sequence
Translation from 16 to 648
> BS12313.pep
MNTQIVVFAVALMMHCISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQV
SAGGQLDVDVTLKDPQGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFS
AFSHKIVYVDFQVGEEPALPGVDEHATVLTQMETSSQAIHKGLNDILDAQ
THHRLREAQGRKRAEDLNQRVMVWSSLETAAVIVIGLVQIMVLRNFFTDR
KPSQAHYGRL*
BS12313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-PB | 210 | CG1967-PB | 1..210 | 1..210 | 1077 | 100 | Plus |
p24-1-PA | 210 | CG1967-PA | 1..210 | 1..210 | 1077 | 100 | Plus |
CHOp24-PB | 208 | CG3564-PB | 7..202 | 4..197 | 238 | 27 | Plus |
CHOp24-PA | 208 | CG3564-PA | 7..202 | 4..197 | 238 | 27 | Plus |
opm-PA | 242 | CG9053-PA | 33..227 | 21..197 | 194 | 31.6 | Plus |