Clone BS12316 Report

Search the DGRC for BS12316

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:123
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG31323-RA
Protein status:BS12316.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12316.complete Sequence

542 bp assembled on 2006-11-01

GenBank Submission: FJ637140

> BS12316.complete
GAAGTTATCAGTCGACATGGCGGTGGGCAGTTCAATTATGGAGACCGTCG
CTATTTTGGCCCTGCTGCTTGGCCTGTTCATTCGAAGTGGCTACTGCATA
GACTGTTTCAAATGCGTGTCATACAATGGTGCTAACAAGGCCTGCGACGA
TCCCTTTCACAACAACTACTCAACGGCCATTTTGGAGTCGCCCTGCATGG
GCGGCCGGAAGGGGCGTGACGGCCTGTTTCCGGCCACCGCTTGCATCAAG
ATCGCCGGCTATTACGATGGAACTGGCGAGACGATAACGGTGAGAGGTTG
CGCCCTGGACAGCGGCACCCTGACCACCGACACAGAGATTATAAGAATGT
CGCATTGCGGAAAGTTCTACTACGATGACAAGTACGTGCACGGGTGCTTG
CAGAGCTGCAGCGATGCGGATGCCTGCAACTCGGCCAGGAGGCAGGGCGC
AAGTCCCGCAGACCTGGAGTCACTGATGAGGCACCTGCTCAGTCTGGTCG
TGTTCCTATTGGCTGCCAGCAGGTAGAAGCTTTCTAGACCAT

BS12316.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-RB 510 CG31323-PB 1..510 17..526 2550 100 Plus
CG31323-RA 510 CG31323-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-RB 1033 CG31323-RB 162..671 17..526 2550 100 Plus
CG31323-RA 3489 CG31323-RA 285..794 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26184044..26184221 89..266 890 100 Plus
3R 32079331 3R 26184468..26184612 382..526 725 100 Plus
3R 32079331 3R 26184289..26184407 266..384 595 100 Plus
3R 32079331 3R 26183892..26183965 17..90 370 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:55:39 has no hits.

BS12316.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:22 Download gff for BS12316.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..510 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:11 Download gff for BS12316.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 277..792 9..526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:21 Download gff for BS12316.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 285..794 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:22 Download gff for BS12316.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 277..792 9..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:48 Download gff for BS12316.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 285..794 17..526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:48 Download gff for BS12316.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26184045..26184221 90..266 100 -> Plus
3R 26184290..26184404 267..381 100 -> Plus
3R 26184468..26184612 382..526 100   Plus
3R 26183892..26183964 17..89 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:21 Download gff for BS12316.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22009767..22009943 90..266 100 -> Plus
arm_3R 22010012..22010126 267..381 100 -> Plus
arm_3R 22010190..22010334 382..526 100   Plus
arm_3R 22009614..22009686 17..89 100 -> Plus

BS12316.pep Sequence

Translation from 16 to 525

> BS12316.pep
MAVGSSIMETVAILALLLGLFIRSGYCIDCFKCVSYNGANKACDDPFHNN
YSTAILESPCMGGRKGRDGLFPATACIKIAGYYDGTGETITVRGCALDSG
TLTTDTEIIRMSHCGKFYYDDKYVHGCLQSCSDADACNSARRQGASPADL
ESLMRHLLSLVVFLLAASR*

BS12316.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-PB 169 CG31323-PB 1..169 1..169 898 100 Plus
CG31323-PA 169 CG31323-PA 1..169 1..169 898 100 Plus