BS12321.complete Sequence
803 bp assembled on 2006-11-01
GenBank Submission: FJ637141
> BS12321.complete
GAAGTTATCAGTCGACATGCGTGCTTTTATCGTCCTCTGTCTGTTGGCCG
TGAGCTGCAGTGCCGATAAACTGGGCTACAACTACCAACCCGTGGCACAT
GCCGATGAGGGTCTGTCCTTCCTGCCCGGAAGTGGTCAGGTGATTGGAGA
ACTTCCGTCGCAGGTGCTGCCCGTGCAGAGTGGCGAAGCAGTCCTCTCCC
AGCCCATTGAAGCACCTGTTGCTCCCCAGATTGCACCTTTGGTAGAGGAG
TTCCAGAAGGAGTTCTACAGCTACGCCGCCCCCGAGGAACAGTACGATGA
GGGTGCCAGCAACCAGCAGATCGCCAACTCCCTGAAAAAGAACCTCCGCG
TCGTCTTCATTCGCACTCCCGAAAATCAGGGCTTCGAGCGCGCTGCCCTC
CAGTTGGCCAAGCAGTCTGCTCAGCAGGAGACCGCCATCTATGTTCTCAC
CAAACAGTCCGATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGA
CGAGCTCCACCAACAAACCAGAGGTGCACTTCGTCAAGTACCGCACTCCA
GAGGATGCGGCTAATGCCCAACTGGCCATCCAGAACCAGTACAACCAATT
GCCCGGCGTGTCTCGCATCTCCAACGAGGGTCGTGCTCCTGTCCTGAACT
TTGCCTCGTCTCCAGCCCAGGCTGCTGCCATCCCAGCCGTTGCTGCAGCT
GCTCCCAGCTCGGAGTACCTGCCCGCCAATGTGGTGGCTGGCCAGGATTA
CCTGCCACCCAATCTGCGTCGTTTCCGCGTCAAGTAAAAGCTTTCTAGAC
CAT
BS12321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-RA | 771 | CG14243-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
TwdlN-RA | 930 | CG5476-PA | 589..783 | 407..601 | 360 | 79 | Plus |
TwdlL-RA | 858 | CG6447-PA | 526..720 | 407..601 | 315 | 77.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-RA | 965 | CG14243-RA | 43..822 | 9..788 | 3870 | 99.7 | Plus |
TwdlN-RA | 1088 | CG5476-RA | 651..845 | 407..601 | 360 | 79 | Plus |
TwdlL-RA | 1002 | CG6447-RA | 576..770 | 407..601 | 315 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26640155..26640911 | 32..788 | 3785 | 100 | Plus |
3R | 32079331 | 3R | 26632519..26632713 | 407..601 | 360 | 79 | Plus |
3R | 32079331 | 3R | 26624819..26625013 | 601..407 | 315 | 77.4 | Minus |
3R | 32079331 | 3R | 26619781..26619971 | 407..597 | 295 | 77 | Plus |
3R | 32079331 | 3R | 26622713..26622903 | 597..407 | 295 | 77 | Minus |
3R | 32079331 | 3R | 26656932..26657146 | 332..546 | 265 | 74.9 | Plus |
3R | 32079331 | 3R | 26628139..26628304 | 570..405 | 260 | 77.1 | Minus |
3R | 32079331 | 3R | 26630368..26630533 | 405..570 | 245 | 76.5 | Plus |
3R | 32079331 | 3R | 26626194..26626256 | 583..521 | 210 | 88.9 | Minus |
3R | 32079331 | 3R | 26620828..26620903 | 582..507 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:15 has no hits.
BS12321.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:23 Download gff for
BS12321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:13 Download gff for
BS12321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 39..831 | 5..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:08 Download gff for
BS12321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 51..819 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:23 Download gff for
BS12321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 39..831 | 5..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:04 Download gff for
BS12321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 51..819 | 17..785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:04 Download gff for
BS12321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26640155..26640908 | 32..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:08 Download gff for
BS12321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22465877..22466630 | 32..785 | 100 | | Plus |
BS12321.pep Sequence
Translation from 16 to 786
> BS12321.pep
MRAFIVLCLLAVSCSADKLGYNYQPVAHADEGLSFLPGSGQVIGELPSQV
LPVQSGEAVLSQPIEAPVAPQIAPLVEEFQKEFYSYAAPEEQYDEGASNQ
QIANSLKKNLRVVFIRTPENQGFERAALQLAKQSAQQETAIYVLTKQSDV
SNLAKQLNALKTSSTNKPEVHFVKYRTPEDAANAQLAIQNQYNQLPGVSR
ISNEGRAPVLNFASSPAQAAAIPAVAAAAPSSEYLPANVVAGQDYLPPNL
RRFRVK*
BS12321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-PA | 256 | CG14243-PA | 1..256 | 1..256 | 1282 | 100 | Plus |
TwdlK-PA | 247 | CG6460-PA | 1..247 | 1..255 | 594 | 50 | Plus |
TwdlJ-PB | 274 | CG5471-PB | 1..273 | 1..254 | 582 | 51.3 | Plus |
TwdlM-PA | 288 | CG5468-PA | 1..284 | 1..239 | 569 | 45.2 | Plus |
TwdlL-PA | 285 | CG6447-PA | 1..280 | 1..239 | 559 | 45.3 | Plus |