Clone BS12321 Report

Search the DGRC for BS12321

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:123
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlD-RA
Protein status:BS12321.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12321.complete Sequence

803 bp assembled on 2006-11-01

GenBank Submission: FJ637141

> BS12321.complete
GAAGTTATCAGTCGACATGCGTGCTTTTATCGTCCTCTGTCTGTTGGCCG
TGAGCTGCAGTGCCGATAAACTGGGCTACAACTACCAACCCGTGGCACAT
GCCGATGAGGGTCTGTCCTTCCTGCCCGGAAGTGGTCAGGTGATTGGAGA
ACTTCCGTCGCAGGTGCTGCCCGTGCAGAGTGGCGAAGCAGTCCTCTCCC
AGCCCATTGAAGCACCTGTTGCTCCCCAGATTGCACCTTTGGTAGAGGAG
TTCCAGAAGGAGTTCTACAGCTACGCCGCCCCCGAGGAACAGTACGATGA
GGGTGCCAGCAACCAGCAGATCGCCAACTCCCTGAAAAAGAACCTCCGCG
TCGTCTTCATTCGCACTCCCGAAAATCAGGGCTTCGAGCGCGCTGCCCTC
CAGTTGGCCAAGCAGTCTGCTCAGCAGGAGACCGCCATCTATGTTCTCAC
CAAACAGTCCGATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGA
CGAGCTCCACCAACAAACCAGAGGTGCACTTCGTCAAGTACCGCACTCCA
GAGGATGCGGCTAATGCCCAACTGGCCATCCAGAACCAGTACAACCAATT
GCCCGGCGTGTCTCGCATCTCCAACGAGGGTCGTGCTCCTGTCCTGAACT
TTGCCTCGTCTCCAGCCCAGGCTGCTGCCATCCCAGCCGTTGCTGCAGCT
GCTCCCAGCTCGGAGTACCTGCCCGCCAATGTGGTGGCTGGCCAGGATTA
CCTGCCACCCAATCTGCGTCGTTTCCGCGTCAAGTAAAAGCTTTCTAGAC
CAT

BS12321.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-RA 771 CG14243-PA 1..771 17..787 3855 100 Plus
TwdlN-RA 930 CG5476-PA 589..783 407..601 360 79 Plus
TwdlL-RA 858 CG6447-PA 526..720 407..601 315 77.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-RA 965 CG14243-RA 43..822 9..788 3870 99.7 Plus
TwdlN-RA 1088 CG5476-RA 651..845 407..601 360 79 Plus
TwdlL-RA 1002 CG6447-RA 576..770 407..601 315 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26640155..26640911 32..788 3785 100 Plus
3R 32079331 3R 26632519..26632713 407..601 360 79 Plus
3R 32079331 3R 26624819..26625013 601..407 315 77.4 Minus
3R 32079331 3R 26619781..26619971 407..597 295 77 Plus
3R 32079331 3R 26622713..26622903 597..407 295 77 Minus
3R 32079331 3R 26656932..26657146 332..546 265 74.9 Plus
3R 32079331 3R 26628139..26628304 570..405 260 77.1 Minus
3R 32079331 3R 26630368..26630533 405..570 245 76.5 Plus
3R 32079331 3R 26626194..26626256 583..521 210 88.9 Minus
3R 32079331 3R 26620828..26620903 582..507 185 82.9 Minus
Blast to na_te.dros performed on 2014-11-27 20:15:15 has no hits.

BS12321.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:23 Download gff for BS12321.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:20:13 Download gff for BS12321.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 39..831 5..798 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:08 Download gff for BS12321.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 51..819 17..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:23 Download gff for BS12321.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 39..831 5..798 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:04 Download gff for BS12321.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 51..819 17..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:04 Download gff for BS12321.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26640155..26640908 32..785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:08 Download gff for BS12321.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22465877..22466630 32..785 100   Plus

BS12321.pep Sequence

Translation from 16 to 786

> BS12321.pep
MRAFIVLCLLAVSCSADKLGYNYQPVAHADEGLSFLPGSGQVIGELPSQV
LPVQSGEAVLSQPIEAPVAPQIAPLVEEFQKEFYSYAAPEEQYDEGASNQ
QIANSLKKNLRVVFIRTPENQGFERAALQLAKQSAQQETAIYVLTKQSDV
SNLAKQLNALKTSSTNKPEVHFVKYRTPEDAANAQLAIQNQYNQLPGVSR
ISNEGRAPVLNFASSPAQAAAIPAVAAAAPSSEYLPANVVAGQDYLPPNL
RRFRVK*

BS12321.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-PA 256 CG14243-PA 1..256 1..256 1282 100 Plus
TwdlK-PA 247 CG6460-PA 1..247 1..255 594 50 Plus
TwdlJ-PB 274 CG5471-PB 1..273 1..254 582 51.3 Plus
TwdlM-PA 288 CG5468-PA 1..284 1..239 569 45.2 Plus
TwdlL-PA 285 CG6447-PA 1..280 1..239 559 45.3 Plus