Clone BS12335 Report

Search the DGRC for BS12335

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:123
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptSnx3-RA
Protein status:BS12335.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12335.complete Sequence

536 bp assembled on 2006-11-01

GenBank Submission: FJ637144

> BS12335.complete
GAAGTTATCAGTCGACATGATGGTTGAGTCCGATGGAACCGCCGACGCCA
CCCGCCGCCTAAACGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTG
CCCGCCAACTTCCTGGAGATCGACGTGGTCAATCCGCTGACCACCATGGC
GGCGGGCAAGAAGCGCTACACGGACTACGAGGTCCGGATGCGGACCAATC
TGCCCGTCTTTAAGGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGAC
TTTGAGTGGCTGCGAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCC
ACCACTCCCAGGAAAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACG
AGGGCATCTTTGACGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAG
GCCTTCATCAACAAGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTG
CCTGCATATGTTCCTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCG
GCAAGATTCGGAACACATAAAAGCTTTCTAGACCAT

BS12335.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-RB 504 CG6359-PB 1..504 17..520 2520 100 Plus
Snx3-RA 504 CG6359-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-RB 1860 CG6359-RB 314..817 17..520 2520 100 Plus
Snx3-RA 1426 CG6359-RA 314..817 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12629220..12629452 288..520 1165 100 Plus
3R 32079331 3R 12628344..12628520 17..193 885 100 Plus
3R 32079331 3R 12628888..12628984 193..289 485 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:00:16 has no hits.

BS12335.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:04 Download gff for BS12335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:46 Download gff for BS12335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 297..814 9..526 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:20 Download gff for BS12335.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 314..815 17..518 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:04 Download gff for BS12335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 297..814 9..526 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:06 Download gff for BS12335.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 314..815 17..518 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:06 Download gff for BS12335.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12628344..12628520 17..193 100 -> Plus
3R 12628889..12628984 194..289 100 -> Plus
3R 12629222..12629450 290..518 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:20 Download gff for BS12335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8454066..8454242 17..193 100 -> Plus
arm_3R 8454611..8454706 194..289 100 -> Plus
arm_3R 8454944..8455172 290..518 100   Plus

BS12335.pep Sequence

Translation from 16 to 519

> BS12335.pep
MMVESDGTADATRRLNVKKQTLDDAYAVPANFLEIDVVNPLTTMAAGKKR
YTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKIVVPPLPGK
AWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFL
QENVIDKNYVPGKIRNT*

BS12335.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-PB 167 CG6359-PB 1..167 1..167 872 100 Plus
Snx3-PA 167 CG6359-PA 1..167 1..167 872 100 Plus