Clone BS12339 Report

Search the DGRC for BS12339

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:123
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptSod-RA
Protein status:BS12339.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12339.complete Sequence

494 bp assembled on 2006-11-01

GenBank Submission: FJ637145

> BS12339.complete
GAAGTTATCAGTCGACATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCG
ATGCCAAGGGCACGGTTTTCTTCGAACAGGAGAGCAGCGGTACGCCCGTG
AAGGTCTCCGGTGAGGTGTGCGGCCTGGCCAAGGGTCTGCACGGATTCCA
CGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCCGGACCGC
ACTTCAATCCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGT
CACCTGGGCGATCTGGGCAACATTGAGGCCACCGGCGACTGCCCCACCAA
GGTCAACATCACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCA
TCGGACGCACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGT
GGACACGAGCTGAGCAAGTCAACGGGCAACGCTGGTGCCCGCATCGGGTG
CGGCGTTATTGGCATTGCCAAGGTCTAAAAGCTTTCTAGACCAT

BS12339.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-RA 462 CG11793-PA 1..462 17..478 2310 100 Plus
Sod-RD 504 CG11793-PD 109..504 83..478 1980 100 Plus
Sod-RD 504 CG11793-PD 1..66 17..82 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-RA 735 CG11793-RA 93..563 8..478 2325 99.6 Plus
Sod-RD 777 CG11793-RD 210..605 83..478 1980 100 Plus
Sod-RD 777 CG11793-RD 93..167 8..82 345 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11112453..11112850 478..81 1990 100 Minus
3L 28110227 3L 11113574..11113648 82..8 345 97.3 Minus
Blast to na_te.dros performed on 2014-11-27 07:20:24 has no hits.

BS12339.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:05 Download gff for BS12339.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:48 Download gff for BS12339.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 88..563 2..482 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:27 Download gff for BS12339.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 102..561 17..476 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:05 Download gff for BS12339.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 88..563 2..482 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:35 Download gff for BS12339.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 102..561 17..476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:35 Download gff for BS12339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11112455..11112848 83..476 100 <- Minus
3L 11113574..11113639 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:27 Download gff for BS12339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11105555..11105948 83..476 100 <- Minus
arm_3L 11106674..11106739 17..82 100   Minus

BS12339.pep Sequence

Translation from 16 to 477

> BS12339.pep
MVVKAVCVINGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFG
DNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITD
SKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI
AKV*

BS12339.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-PA 153 CG11793-PA 1..153 1..153 818 100 Plus
Sod-PD 167 CG11793-PD 1..167 1..153 793 91.6 Plus
Sod3-PA 181 CG9027-PA 40..180 10..150 374 55.3 Plus
Sod3-PB 181 CG9027-PB 40..180 10..150 374 55.3 Plus
Sod3-PD 217 CG9027-PD 40..180 10..150 374 55.3 Plus