BS12339.complete Sequence
494 bp assembled on 2006-11-01
GenBank Submission: FJ637145
> BS12339.complete
GAAGTTATCAGTCGACATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCG
ATGCCAAGGGCACGGTTTTCTTCGAACAGGAGAGCAGCGGTACGCCCGTG
AAGGTCTCCGGTGAGGTGTGCGGCCTGGCCAAGGGTCTGCACGGATTCCA
CGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCCGGACCGC
ACTTCAATCCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGT
CACCTGGGCGATCTGGGCAACATTGAGGCCACCGGCGACTGCCCCACCAA
GGTCAACATCACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCA
TCGGACGCACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGT
GGACACGAGCTGAGCAAGTCAACGGGCAACGCTGGTGCCCGCATCGGGTG
CGGCGTTATTGGCATTGCCAAGGTCTAAAAGCTTTCTAGACCAT
BS12339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-RA | 462 | CG11793-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Sod-RD | 504 | CG11793-PD | 109..504 | 83..478 | 1980 | 100 | Plus |
Sod-RD | 504 | CG11793-PD | 1..66 | 17..82 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-RA | 735 | CG11793-RA | 93..563 | 8..478 | 2325 | 99.6 | Plus |
Sod-RD | 777 | CG11793-RD | 210..605 | 83..478 | 1980 | 100 | Plus |
Sod-RD | 777 | CG11793-RD | 93..167 | 8..82 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11112453..11112850 | 478..81 | 1990 | 100 | Minus |
3L | 28110227 | 3L | 11113574..11113648 | 82..8 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:20:24 has no hits.
BS12339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:05 Download gff for
BS12339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:48 Download gff for
BS12339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 88..563 | 2..482 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:27 Download gff for
BS12339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 102..561 | 17..476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:05 Download gff for
BS12339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 88..563 | 2..482 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:35 Download gff for
BS12339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 102..561 | 17..476 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:35 Download gff for
BS12339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11112455..11112848 | 83..476 | 100 | <- | Minus |
3L | 11113574..11113639 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:27 Download gff for
BS12339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11105555..11105948 | 83..476 | 100 | <- | Minus |
arm_3L | 11106674..11106739 | 17..82 | 100 | | Minus |
BS12339.pep Sequence
Translation from 16 to 477
> BS12339.pep
MVVKAVCVINGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFG
DNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITD
SKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI
AKV*
BS12339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-PA | 153 | CG11793-PA | 1..153 | 1..153 | 818 | 100 | Plus |
Sod-PD | 167 | CG11793-PD | 1..167 | 1..153 | 793 | 91.6 | Plus |
Sod3-PA | 181 | CG9027-PA | 40..180 | 10..150 | 374 | 55.3 | Plus |
Sod3-PB | 181 | CG9027-PB | 40..180 | 10..150 | 374 | 55.3 | Plus |
Sod3-PD | 217 | CG9027-PD | 40..180 | 10..150 | 374 | 55.3 | Plus |