BS12340.complete Sequence
1328 bp assembled on 2006-11-01
GenBank Submission: FJ637146
> BS12340.complete
GAAGTTATCAGTCGACATGACTGTGAAATTGGCCAAGCTGTTTGGGGGCG
TGACAACGGGTGGCATTGAGATTCTGGACTCCCCGGGCAATCCGCAACAG
CATCAGGAGCAACAGCATCTGCAGCAACAGCAACAGCAACCACTAACAGC
ACCGCAACAACATATGCAACAGCAACCACCACCTCTGCCGCCACCAAATG
CGAATATGAAGAGTCTCAAGTATTATGAGCACCTGCAGGCCACCTACGAC
TGTCACGATCTGATGGATCATGACCAGGATCAGGATGACTACGAGGACAC
CTGTATGCAGCGCAACCATCCGTATAACAATTCGCAGAGACCGCTTTTGG
GCGACAGGCGACCGCAACTCACTGTGATGAGTGTGGGTAAAAAGGGTGCA
AAGTCTGGGATGCAAGTGCAGAATCTGCCACCATTGCCGCCACTAAGGAC
ATACATCTCACCATATGTGCAGCAACAGAAACGGGATAGCGCGAAGGGAT
TGCATGGATTCAATGACTTCGATGCCCTGTCCCAGCAATATAATCAACAC
CTTCAGAGTCCACACATTGGCTATCCCTATGGCAGTCCACCGTCGCCAAC
GGCTCAATCCAGTGATTTTTGCTTTGATCGCCAAACTGGTTTGGTCATGC
TGCCCGGCACCGCGGGTGGCCAGGTCAGCTCGAGCAGTTCGAGCAACTGC
AGCAGTTCGCACACCACGTCCACCTCCTCGCCCACTAGATATTATCCGGA
TAATCCCGGTCATGCCACTGGTCTTTTTGCCTCCCGCTTCGAGGATGACT
TTTGCATGCGTCGTCCTGCCGTCCAGGAAAGTTCATCGCCCATCATTGCC
GGTGGTTGTGGAGGCGGAACAGGATCAGGATCAGGAGTGGCACTAGGAGT
AGGTGGAGGACCCTTCATCTTTGGCATTGCACCGGAGCAGCAGGTCACGG
ATTATGGAAGCAACCCACTGCCACCAACTCCTCCGCAGCTGAAACAACAA
TCTGTGATTAGTCGAAGCCCACTGCAACAATCGCTGAGCGACACAAGTGC
CGCCAGCAGTGGCAAGGGCTCCAAATTCTTATTGCGTAAGCGTAAATCAA
AGAAGACAACCGCAGCAGCCGCAGCAACAACGGAGGCCGCAACAACGGCC
AAAAAGGATGGCAAAAAGGCTATTGCCCAGCCACAGCCTTCGATCAAGTG
CGTCCTGGTGGGCGACGGAGCCGTGGGCAAGACGAATCTGATATTATCGT
ATCTGGAGAATCGCTTCAATCCGGAGCACATACCCACGGCATCAGACATT
TATAATGTGTAAAAGCTTTCTAGACCAT
BS12340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoU-RA | 1296 | CG34104-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
| RhoU-RC | 1749 | CG34104-PC | 1..1291 | 17..1307 | 6455 | 100 | Plus |
| RhoU-RB | 1749 | CG34104-PB | 1..1291 | 17..1307 | 6455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoU-RA | 2228 | CG34104-RA | 511..1807 | 17..1313 | 6485 | 100 | Plus |
| RhoU-RC | 2649 | CG34104-RC | 473..1763 | 17..1307 | 6455 | 100 | Plus |
| RhoU-RB | 2687 | CG34104-RB | 511..1801 | 17..1307 | 6455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10122197..10123204 | 17..1024 | 5040 | 100 | Plus |
| X | 23542271 | X | 10133971..10134116 | 1024..1169 | 730 | 100 | Plus |
| X | 23542271 | X | 10134405..10134543 | 1169..1307 | 695 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1034..1139 | 1086..1187 | 124 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1547..1605 | 1106..1167 | 123 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1126..1178 | 1106..1158 | 112 | 67.9 | Plus |
BS12340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:07 Download gff for
BS12340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RA | 1..1296 | 17..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:24 Download gff for
BS12340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RA | 505..1798 | 17..1310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:46 Download gff for
BS12340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RA | 511..1804 | 17..1310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:07 Download gff for
BS12340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RA | 497..1806 | 9..1322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:37 Download gff for
BS12340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoU-RA | 511..1804 | 17..1310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:37 Download gff for
BS12340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10122197..10123204 | 17..1024 | 100 | -> | Plus |
| X | 10133972..10134116 | 1025..1169 | 100 | -> | Plus |
| X | 10134406..10134545 | 1170..1310 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:46 Download gff for
BS12340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10016230..10017237 | 17..1024 | 100 | -> | Plus |
| arm_X | 10028005..10028149 | 1025..1169 | 100 | -> | Plus |
| arm_X | 10028439..10028578 | 1170..1310 | 99 | | Plus |
BS12340.pep Sequence
Translation from 16 to 1311
> BS12340.pep
MTVKLAKLFGGVTTGGIEILDSPGNPQQHQEQQHLQQQQQQPLTAPQQHM
QQQPPPLPPPNANMKSLKYYEHLQATYDCHDLMDHDQDQDDYEDTCMQRN
HPYNNSQRPLLGDRRPQLTVMSVGKKGAKSGMQVQNLPPLPPLRTYISPY
VQQQKRDSAKGLHGFNDFDALSQQYNQHLQSPHIGYPYGSPPSPTAQSSD
FCFDRQTGLVMLPGTAGGQVSSSSSSNCSSSHTTSTSSPTRYYPDNPGHA
TGLFASRFEDDFCMRRPAVQESSSPIIAGGCGGGTGSGSGVALGVGGGPF
IFGIAPEQQVTDYGSNPLPPTPPQLKQQSVISRSPLQQSLSDTSAASSGK
GSKFLLRKRKSKKTTAAAAATTEAATTAKKDGKKAIAQPQPSIKCVLVGD
GAVGKTNLILSYLENRFNPEHIPTASDIYNV*
BS12340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoU-PA | 431 | CG34104-PA | 1..431 | 1..431 | 2287 | 100 | Plus |
| RhoU-PC | 582 | CG34104-PC | 1..430 | 1..430 | 2283 | 100 | Plus |
| RhoU-PB | 582 | CG34104-PB | 1..430 | 1..430 | 2283 | 100 | Plus |
