BS12354.complete Sequence
482 bp assembled on 2006-11-01
GenBank Submission: FJ637148
> BS12354.complete
GAAGTTATCAGTCGACATGGAGGACGACGAGAAAATGGACATCATGCGCA
AGGCATTCCAAATGTTCGACACACAAAAGACGGGCTTCATTGAGACGCTG
CGTCTGAAGACGATCCTCAACAGCATGGGTCAGATGTTCGACGATAGCGA
ACTGCAGGCTCTGATCGACGACAACGATCCGGAGGACACCGGCAAGGTTA
ACTTCGACGGCTTCTGCAGCATCGCTGCCCATTTCCTGGAAGAGGAGGAT
GCCGAGGCCATCCAGAAGGAGCTGAAAGAGGCCTTTCGTCTGTACGATCG
CGAGGGAAATGGTTACATCACCACCTCAACGCTGAAGGAAATTCTCGCCG
CCCTCGACGACAAGCTCTCCTCCAGCGATCTGGACGGCATCATCGCTGAG
ATTGACACTGATGGATCCGGTACCGTGGACTTTGATGAATTCATGGAGAT
GATGGCGGGCGAGTAGAAGCTTTCTAGACCAT
BS12354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC25D-RC | 450 | CG6514-PC | 1..450 | 17..466 | 2250 | 100 | Plus |
| TpnC25D-RA | 450 | CG6514-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
| TpnC25D-RB | 432 | CG6514-PB | 1..432 | 35..466 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC25D-RC | 1107 | CG6514-RC | 560..1011 | 17..468 | 2260 | 100 | Plus |
| TpnC25D-RA | 645 | CG6514-RA | 98..549 | 17..468 | 2260 | 100 | Plus |
| TpnC25D-RB | 688 | CG6514-RB | 142..592 | 18..468 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5218446..5218864 | 19..437 | 2095 | 100 | Plus |
| 2R | 25286936 | 2R | 11274671..11274793 | 346..224 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:11:22 has no hits.
BS12354.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:09 Download gff for
BS12354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:53 Download gff for
BS12354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 82..543 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:33 Download gff for
BS12354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 97..546 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:09 Download gff for
BS12354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 82..543 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:40 Download gff for
BS12354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 98..547 | 17..466 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:40 Download gff for
BS12354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5218445..5218864 | 17..437 | 99 | -> | Plus |
| 2L | 5218927..5218955 | 438..466 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:33 Download gff for
BS12354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5218445..5218864 | 17..437 | 99 | -> | Plus |
| arm_2L | 5218927..5218955 | 438..466 | 100 | | Plus |
BS12354.pep Sequence
Translation from 16 to 465
> BS12354.pep
MEDDEKMDIMRKAFQMFDTQKTGFIETLRLKTILNSMGQMFDDSELQALI
DDNDPEDTGKVNFDGFCSIAAHFLEEEDAEAIQKELKEAFRLYDREGNGY
ITTSTLKEILAALDDKLSSSDLDGIIAEIDTDGSGTVDFDEFMEMMAGE*
BS12354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC25D-PC | 149 | CG6514-PC | 1..149 | 1..149 | 758 | 100 | Plus |
| TpnC25D-PA | 149 | CG6514-PA | 1..149 | 1..149 | 758 | 100 | Plus |
| TpnC25D-PB | 143 | CG6514-PB | 1..143 | 7..149 | 726 | 100 | Plus |
| TpnC47D-PB | 155 | CG9073-PB | 11..155 | 5..149 | 425 | 58.6 | Plus |
| TpnC47D-PA | 155 | CG9073-PA | 11..155 | 5..149 | 425 | 58.6 | Plus |
