Clone BS12358 Report

Search the DGRC for BS12358

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:123
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG7429-RA
Protein status:BS12358.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12358.complete Sequence

563 bp assembled on 2006-11-01

GenBank Submission: FJ637150

> BS12358.complete
GAAGTTATCAGTCGACATGGATGCAACTGCAGCAATCACCGGCAATGTGG
ACAAGACCCAGATACCGCCGCTGAACCAGAAACGCATCCTGGCCTTCGTT
AACCATTTCCTCGTCAGCACCTGCACCTTTCTAAATGAATTTGCCCTGGG
CTGTGAGACGAAGTTCGTGGAGATGGAACGGCAGCTGCAGAAGACGGAGG
CCGCCCTCATCATCCTGGAGGCCAAGCTGGCGTCTATACCCACCGAGCAC
CATGTAGCGACTGAGGCTACCGAAGCGCCAGCGATATCAAACCAGCAACG
CAACGAAGAAGCATCCATGGTGGACACCACGGAACCACCGACCACCGAGA
ATCCTACGGAGCCGGAACTCCCGCCTGAATCGGTTGGTGTGCGCGCCTGT
GAAGATCAACGTTACAGAAAGTTCTTCAAAATGGTGCAAGTGGGTGTGCC
CGCACCGGCGGTTAAGCAGAAAATGCAATCCGAAGGTCTGGAGCCGCGTA
TTTTAGACACACCCGATCTGATCCTGGCGGATGGCCAGCGAGAGTGAAAG
CTTTCTAGACCAT

BS12358.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-RA 531 CG7429-PA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-RA 655 CG7429-RA 44..574 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8041249..8041698 58..507 2250 100 Plus
2L 23513712 2L 8041149..8041193 17..61 225 100 Plus
2L 23513712 2L 8041759..8041798 508..547 200 100 Plus
Blast to na_te.dros performed 2014-11-27 10:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 4334..4392 168..224 119 69.5 Plus

BS12358.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:11 Download gff for BS12358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 1..531 17..547 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:57 Download gff for BS12358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 35..572 17..556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:06 Download gff for BS12358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..573 17..546 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:12 Download gff for BS12358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 35..572 17..556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:43 Download gff for BS12358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..573 17..546 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:43 Download gff for BS12358.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8041759..8041797 508..546 100   Plus
2L 8041149..8041193 17..61 100 -> Plus
2L 8041253..8041698 62..507 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:06 Download gff for BS12358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8041253..8041698 62..507 100 -> Plus
arm_2L 8041759..8041797 508..546 100   Plus
arm_2L 8041149..8041193 17..61 100 -> Plus

BS12358.pep Sequence

Translation from 16 to 546

> BS12358.pep
MDATAAITGNVDKTQIPPLNQKRILAFVNHFLVSTCTFLNEFALGCETKF
VEMERQLQKTEAALIILEAKLASIPTEHHVATEATEAPAISNQQRNEEAS
MVDTTEPPTTENPTEPELPPESVGVRACEDQRYRKFFKMVQVGVPAPAVK
QKMQSEGLEPRILDTPDLILADGQRE*

BS12358.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-PA 176 CG7429-PA 1..176 1..176 899 100 Plus