BS12368.complete Sequence
1901 bp assembled on 2009-12-07
GenBank Submission: KX805643
> BS12368.complete
GAAGTTATCAGTCGACATGTCGGCGACCTCCACGCGAAGTTCGGTGACGA
GGAAATCATCGCTATCAAAAAGTTCTAGTTCAGACAAATCGGCAAAGTCC
TCGTCGAATTCCTCGAAATCTCCGACAGCCGCCAGTGGAAACAAACAGAA
AATGCAGTACACAAAAACCAGGGAGCGCATGGTCGATGATGTTCCACTTC
CGCCCACCCACAAGCTGACCATGTCGGAGGTATACGACGATCCGAAGACC
GGAAAACCCAACTTCGACGCCCTGCGCCAGCACTTTCTGCTGGAGGGGCG
GATCGAGGAGGCGGTGGCCCTGAGGATCATCACCGAAGGAGCCGCCCTGC
TGCGCGAGGAGAAGAACATGATCGACGTGGAGGCACCCATTACCGTGTGC
GGTGACATCCACGGGCAGTTCTTCGATCTCGTAAAGCTCTTCGAAGTGGG
CGGCCCGCCGGCCACCACTAGGTACCTTTTTCTAGGCGACTACGTGGACA
GGGGATACTTCAGTATTGAGTGCGTTCTCTACCTGTGGTCCCTGAAAATA
ACCTACCCCACCACGCTTTCCCTGCTGCGAGGAAATCACGAGTGCAGGCA
TCTCACAGAGTACTTTACCTTCAAGCAGGAATGCATCATCAAGTATTCGG
AAAGTATTTACGACGCCTGCATGGAAGCGTTCGACTGCCTGCCCCTCGCC
GCCCTCCTCAACCAGCAGTTCCTCTGTATTCACGGCGGTCTGTCGCCCGA
GATTTTCACACTCGACGACATCAAGACGCTGAATCGCTTCAGGGAACCAC
CGGCCTACGGGCCCATGTGCGACCTGCTCTGGTCCGATCCTCTGGAGGAC
TTTGGCAACGAGAAGACCAACGAGTTCTTCTCGCACAACTCGGTGCGCGG
GTGCTCCTACTTCTTCAGCTACTCGGCCTGCTGTGAGTTTCTGCAGAAGA
ACAACCTGCTGTCGATAGTCAGGGCGCACGAGGCGCAGGATGCGGGGTAT
CGCATGTATCGGAAGAACCAGGTTACGGGCTTCCCCTCGCTGATCACCAT
ATTCTCCGCCCCCAATTATCTGGATGTTTACAATAACAAGGCAGCTGTGC
TCAAGTACGAGAACAACGTGATGAATATCCGCCAGTTCAACTGCTCGCCA
CATCCCTACTGGCTACCCAACTTCATGGACGTCTTCACATGGTCGCTGCC
CTTCGTGGGCGAAAAGGTAACCGAGATGCTAGTCAACATCCTGAACATTT
GCTCAGACGATGAACTGGTGGCCGGACCCGATGACGAGCTCGAGGAAGAG
CTACGCAAGAAAATTGTGCTCGTGCCGGCGAACGCGAGCAATAATAACAA
TAACAATAATACGCCCAGTAAGCCAGCTTCCATGTCGGCGCTGCGCAAAG
AGATAATTCGGAATAAGATTCGGGCCATTGGCAAGATGTCGCGCGTCTTC
TCCATCCTCAGGGAGGAATCCGAGAGCGTGCTCCAGCTGAAGGGTCTGAC
GCCCACGGGCGCCCTGCCAGTGGGCGCTTTGTCCGGCGGAAGGGATTCCC
TCAAGGAGGCTCTGCAAGGACTGACCGCATCCTCGCACATCCACTCCTTT
GCGGAGGCCAAGGGCCTGGATGCGGTCAACGAACGGATGCCGCCCCGTCG
TCCTCTTTTGATGAGTGCCAGCAGCAGCAGCATCACCACGGTCACAAGGA
GCAGCAGCAGCAGCAGCAACAACAACAACAATAACAGCAACACCAGCAGC
ACCACGACGACAAAGGACATCAGCAACACCAGCAGTAATGATACCGCAAC
CGTAACCAAAACGAGCAGGACGACTGTGAAATCGGCCACCACCAGTAATG
TGCGGGCAGGATTCACCGCCAAGAAGTTCCCATAGAAGCTTTCTAGACCA
T
BS12368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA1-RD | 1869 | CG1455-PD | 1..1869 | 17..1885 | 9345 | 100 | Plus |
| CanA1-RA | 1869 | CG1455-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
| CanA1-RB | 1791 | CG1455-PB | 1..1282 | 17..1298 | 6410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA1-RD | 3064 | CG1455-RD | 765..2634 | 16..1885 | 9350 | 100 | Plus |
| CanA1-RA | 2628 | CG1455-RA | 329..2198 | 16..1885 | 9350 | 100 | Plus |
| CanA1-RB | 2530 | CG1455-RB | 309..1591 | 16..1298 | 6415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16558086..16559068 | 1260..278 | 2155 | 81.3 | Minus |
| X | 23542271 | X | 16566685..16567667 | 1260..278 | 2005 | 80.3 | Minus |
| 3R | 32079331 | 3R | 31041543..31041875 | 188..520 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 31046065..31046391 | 1559..1885 | 1635 | 100 | Plus |
| 3R | 32079331 | 3R | 31042480..31042701 | 778..999 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 31040138..31040310 | 16..188 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 31042274..31042423 | 629..778 | 735 | 99.3 | Plus |
| 3R | 32079331 | 3R | 31043114..31043244 | 1088..1218 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 31041962..31042076 | 519..633 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 31044202..31044302 | 1459..1559 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 31042758..31042853 | 996..1091 | 480 | 100 | Plus |
| X | 23542271 | X | 16557780..16558038 | 1644..1386 | 455 | 78.4 | Minus |
| 3R | 32079331 | 3R | 31044052..31044140 | 1374..1462 | 445 | 100 | Plus |
| X | 23542271 | X | 16566379..16566637 | 1644..1386 | 440 | 78 | Minus |
| 3R | 32079331 | 3R | 31043385..31043470 | 1213..1298 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 31043715..31043795 | 1296..1376 | 405 | 100 | Plus |
| 3R | 32079331 | 3R | 19040860..19040945 | 1700..1785 | 190 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-28 01:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6885 | 1669..1784 | 301 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6912 | 1669..1820 | 271 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2429 | 1691..1814 | 253 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2421..2544 | 1669..1795 | 249 | 68.5 | Plus |
BS12368.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:26 Download gff for
BS12368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 328..2196 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:53 Download gff for
BS12368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 330..2198 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:14 Download gff for
BS12368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 328..2196 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:19 Download gff for
BS12368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 330..2198 | 17..1885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 03:00:19 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 21:01:53 has no hits.
BS12368.pep Sequence
Translation from 16 to 1884
> BS12368.pep
MSATSTRSSVTRKSSLSKSSSSDKSAKSSSNSSKSPTAASGNKQKMQYTK
TRERMVDDVPLPPTHKLTMSEVYDDPKTGKPNFDALRQHFLLEGRIEEAV
ALRIITEGAALLREEKNMIDVEAPITVCGDIHGQFFDLVKLFEVGGPPAT
TRYLFLGDYVDRGYFSIECVLYLWSLKITYPTTLSLLRGNHECRHLTEYF
TFKQECIIKYSESIYDACMEAFDCLPLAALLNQQFLCIHGGLSPEIFTLD
DIKTLNRFREPPAYGPMCDLLWSDPLEDFGNEKTNEFFSHNSVRGCSYFF
SYSACCEFLQKNNLLSIVRAHEAQDAGYRMYRKNQVTGFPSLITIFSAPN
YLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK
VTEMLVNILNICSDDELVAGPDDELEEELRKKIVLVPANASNNNNNNNTP
SKPASMSALRKEIIRNKIRAIGKMSRVFSILREESESVLQLKGLTPTGAL
PVGALSGGRDSLKEALQGLTASSHIHSFAEAKGLDAVNERMPPRRPLLMS
ASSSSITTVTRSSSSSSNNNNNNSNTSSTTTTKDISNTSSNDTATVTKTS
RTTVKSATTSNVRAGFTAKKFP*
BS12368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA1-PD | 622 | CG1455-PD | 1..622 | 1..622 | 3220 | 100 | Plus |
| CanA1-PA | 622 | CG1455-PA | 1..622 | 1..622 | 3220 | 100 | Plus |
| CanA1-PB | 596 | CG1455-PB | 1..596 | 1..622 | 3048 | 95.8 | Plus |
| Pp2B-14D-PB | 570 | CG9842-PB | 24..545 | 2..545 | 2105 | 73.2 | Plus |
| Pp2B-14D-PC | 570 | CG9842-PC | 24..545 | 2..545 | 2105 | 73.2 | Plus |
