BS12386.complete Sequence
2333 bp assembled on 2010-07-15
GenBank Submission: KX804639
> BS12386.complete
GAAGTTATCAGTCGACATGTCCAAAGTGACCGTGCAAGACATTGAGGCGG
TGGACGACTACTGGGGACCAACATTCCGTTCGATCCTTGAAGGCAACAAC
ACTAAGCAGATTGGCGACCAACTGGAGCAGCGGATACGGAGCCATGACAA
AGAGATCGAGCGGATCTGCAATCTGTACTACCAGGGCTTCATCGATTCAA
TTCAGGAGCTGCTCCAGGTGCGCACGCAGGCCCAACAGCTGCACAACGAA
GTGCATTCCTTGGACACGTCCCTTCGCCAGATCAGCGCCTCGCTGATTCA
GCAGGGCAATGATCTAGTGCGGGCCCGTCAGATCGAATCCAATCTGGCCA
GCGCCATCGAGGCACTCAAATCCTGTCTGCCCGCATTGGAGTGCTACATG
AAGTTCACACAGCAGGCAAAGAACAAGCAGTACTACCAGGCGCTGAGAAC
TCTGGAGACTCTGGAGACGGAGCACCTAACGCGCTTGAAGACACACAACT
ACCGATTCGCCACCCAGATGCAGATACAGATTCCCATAATCAAGGAAAAC
ATCCGTCGCTCTTCCGCCTCGGACTTTCGAGAGTTCCTCGAGAACATCCG
GAAGTTTTCACCCCGCATCGGCGAGCTGGCCATCACACACACAAAACAGC
TCCAAAAGCGTGATATCAACGCCATCATTGCCGAGCACATGCAGCAGATG
AATGGCGGCGAAGCCGGCGGAGCAGGTGCTGGCGGGGATGATGATGGTGC
CAACGTTAGTGCCCAGGATCTCATTGACTTCTCCCCCATCTACCGCTGCC
TACACATCTACATGGTGCTGGGTCAGCGGGAGTACTTCGAGAAGGACTAT
CGTCAGCAGCGCAGGGATCAGGCCAAACTGGTGCTTCAACCGCCGCCCAA
CATGCACGACAATTTGGAGGCCTACAAAACGTACATCTGTGCCATCGTTG
GCTTCTTCGTGGTTGAGGATCACGTTAAAAACACGGCGGGCGATGTCGTG
ACCAGCAGTTATTTGGAGGATCTGTGGTCCAGCTCGTTAACCAAGTTTGT
CAACGAAATCAGCATGAGTTCTTCGTCCTGCACCGATCCTAATATCCTTC
TGCGCATTAAGAACCTCATTATGCTGTCCATCAACACCTTTAAGTGCTAC
GGTTACACCGTGAACATCCTCTGGGAACTATTGCACAACATGCGGGATCA
TTATAATGAGGTTTTACTGCAACGCTGGGTACATGTGTTCCGCGAAATTC
TCGACAAGGAACAGTTCCTGCCCATGGTTGTACAAAACACGGAAGAGTAT
GAATGCATCATCGAACGATTCCCCTTCCACTCGGAACAGCTTGAAAATGC
TCCGTTTCCGAAGAAATTCCCCTTTTCGAGAATGGTGCCGGAGGTTTATC
ACCAGGCCAAGGAATTCATGTACGCCTGCATGAAGTTCGCCGAGGAGCTC
ACCCTATCGCCCAACGAGGTGGCCGCCATGGTGCGCAAGGCGGCCAATCT
GCTGCTCACACGAAGTTTCAGTGGCTGTCTATCTGTGGTGTTCCGCCAGC
CGAGCATCACGCTGACGCAGCTCATTCAGATCATAATCGACACGCAGTAC
TTGGAGAAGGCAGGGCCGTTTCTGGACGAGTTCGTGTGTCACATGACCAA
CACGGAGAGGAGCGTATCTCAGACACCATCGGCCATGTTCCACGTGGCCC
GGCAAGATGCCGAGAAGCAGGTGGGCCTACGTATTTGCTCGAAGATCGAT
GAGTTCTTCGAACTAAGCGCCTATGACTGGTTACTAGTAGAGCCGCCGGG
AATAGCCTCCGCCTTCATTACGGACATGATTTCCTACCTTAAGAGCACCT
TTGACAGCTTTGCCTTCAAGCTGCCCCACATCGCCCAGGCGGCCTGCCGA
CGCACCTTCGAGCACATTGCAGAGAAGATTTACTCGATCATGTATGACGA
GGATGTGAAGCAGATTTCCACGGGAGCACTCACACAAATCAACTTGGATC
TGATGCAGTGCGAGTTTTTTGCGGCCTCGGAACCTGTGCCTGGTCTAAAG
GAAGGAGAGCTGAGCAAGTACTTCCTACGTAACCGTCAGCTGTTGGACCT
GCTCATTCTAGAGGAATGGAGCACGTATTTCCATGACTATGGCAAGCAAG
AGAACCGCTACCATCTGGTGCAACCGCAGTCCATTATTGTGATACTGGAA
AAGATCCGCGAGGCGGACAAAAAGCCAATTTTCTCGTTGGTGCGAAAGAA
TGACAAGAAGAAGCTTTTGGAGACGGTGCTCAAGCAGCTTAAGCACATTG
CCGATAGACAGAATTAGAAGCTTTCTAGACCAT
BS12386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec15-RA | 2301 | CG7034-PA | 1..2301 | 17..2317 | 11505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec15-RA | 2799 | CG7034-RA | 80..2382 | 17..2319 | 11515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21106634..21107755 | 1212..91 | 5610 | 100 | Minus |
| 3R | 32079331 | 3R | 21105463..21106573 | 2319..1209 | 5555 | 100 | Minus |
| 3R | 32079331 | 3R | 21107817..21107893 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:32:59 has no hits.
BS12386.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:13 Download gff for
BS12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec15-RA | 72..2372 | 17..2317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:55 Download gff for
BS12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec15-RA | 80..2380 | 17..2317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:52:03 Download gff for
BS12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec15-RA | 80..2380 | 17..2317 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:52:03 Download gff for
BS12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21105465..21106571 | 1211..2317 | 100 | <- | Minus |
| 3R | 21106636..21107753 | 93..1210 | 100 | <- | Minus |
| 3R | 21107818..21107893 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:55 Download gff for
BS12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16931187..16932293 | 1211..2317 | 100 | <- | Minus |
| arm_3R | 16932358..16933475 | 93..1210 | 100 | <- | Minus |
| arm_3R | 16933540..16933615 | 17..92 | 100 | | Minus |
BS12386.pep Sequence
Translation from 16 to 2316
> BS12386.pep
MSKVTVQDIEAVDDYWGPTFRSILEGNNTKQIGDQLEQRIRSHDKEIERI
CNLYYQGFIDSIQELLQVRTQAQQLHNEVHSLDTSLRQISASLIQQGNDL
VRARQIESNLASAIEALKSCLPALECYMKFTQQAKNKQYYQALRTLETLE
TEHLTRLKTHNYRFATQMQIQIPIIKENIRRSSASDFREFLENIRKFSPR
IGELAITHTKQLQKRDINAIIAEHMQQMNGGEAGGAGAGGDDDGANVSAQ
DLIDFSPIYRCLHIYMVLGQREYFEKDYRQQRRDQAKLVLQPPPNMHDNL
EAYKTYICAIVGFFVVEDHVKNTAGDVVTSSYLEDLWSSSLTKFVNEISM
SSSSCTDPNILLRIKNLIMLSINTFKCYGYTVNILWELLHNMRDHYNEVL
LQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKK
FPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRS
FSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSV
SQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYDWLLVEPPGIASAF
ITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQI
STGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILEE
WSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKKPIFSLVRKNDKKKL
LETVLKQLKHIADRQN*
BS12386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec15-PA | 766 | CG7034-PA | 1..766 | 1..766 | 3959 | 100 | Plus |
