BS12387.complete Sequence
494 bp assembled on 2006-11-01
GenBank Submission: FJ637155
> BS12387.complete
GAAGTTATCAGTCGACATGGAATCGCCAGTGGTAAACGAAGTTGCAGCCA
GCTTGGGCGGTGAAAAGCTGGAGGTCTTTCGCAAGCTGAACCTCCTGGAA
CAGCATCGCGTGGAGAGCTACAAGAGTTGGCCCTTTCCGGAGACCGCATC
CTGCAGCATTTCGAAGATGGCCGAGGCGGGATTCTATTGGACGGGCACCA
AGCGGGAAAACGACACTGCCACTTGTTTTGTGTGCGGAAAGACCCTGGAT
GGCTGGGAGCCCGAAGATGATCCGTGGAAGGAGCACGTGAAACATGCACC
CCAATGCGAGTTCGCCAAGCTATCGTGTCCCGAAAGGAATTTAACCGTAT
CACAATTTCTGGAAATTCTTGGAACCGTCGTTAAAGGCAGCATAGAGAAA
ACCTGCAAAGCCTTCAAATCGAGCTTCGTTCGGGAGAATGAGAAGCGTCT
AGATGAGTTTACGCGTAATCAAAAATAGAAGCTTTCTAGACCAT
BS12387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Det-RA | 462 | CG12265-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Det-RA | 651 | CG12265-RA | 105..567 | 17..479 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17149996..17150181 | 165..350 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 17149771..17149920 | 17..166 | 750 | 100 | Plus |
| 3R | 32079331 | 3R | 17150239..17150371 | 347..479 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:10:13 has no hits.
BS12387.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:35 Download gff for
BS12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Det-RA | 68..546 | 5..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:11 Download gff for
BS12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Det-RA | 105..558 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:54 Download gff for
BS12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12265-RA | 68..546 | 5..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:21 Download gff for
BS12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Det-RA | 105..558 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:21 Download gff for
BS12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17150239..17150362 | 347..470 | 100 | | Plus |
| 3R | 17149998..17150177 | 167..346 | 100 | -> | Plus |
| 3R | 17149771..17149920 | 17..166 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:11 Download gff for
BS12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12975493..12975642 | 17..166 | 100 | -> | Plus |
| arm_3R | 12975720..12975899 | 167..346 | 100 | -> | Plus |
| arm_3R | 12975961..12976084 | 347..470 | 100 | | Plus |
BS12387.pep Sequence
Translation from 16 to 477
> BS12387.pep
MESPVVNEVAASLGGEKLEVFRKLNLLEQHRVESYKSWPFPETASCSISK
MAEAGFYWTGTKRENDTATCFVCGKTLDGWEPEDDPWKEHVKHAPQCEFA
KLSCPERNLTVSQFLEILGTVVKGSIEKTCKAFKSSFVRENEKRLDEFTR
NQK*
BS12387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Det-PA | 153 | CG12265-PA | 1..153 | 1..153 | 822 | 100 | Plus |
| Bruce-PC | 4852 | CG6303-PC | 248..321 | 28..101 | 157 | 37.8 | Plus |
| Bruce-PE | 4865 | CG6303-PE | 248..321 | 28..101 | 157 | 37.8 | Plus |
| Bruce-PD | 4875 | CG6303-PD | 248..321 | 28..101 | 157 | 37.8 | Plus |
| Bruce-PA | 4876 | CG6303-PA | 248..321 | 28..101 | 157 | 37.8 | Plus |
