BS12390.complete Sequence
1646 bp assembled on 2006-11-01
GenBank Submission: FJ637156
> BS12390.complete
GAAGTTATCAGTCGACATGGGTAAGAACACGAAGCGCAACAAGAAGACAA
AACAGCAGCAACAGCAGCCACAACAAAACGGAGTAACTGCATCCGCATCC
GGCACAGCAGTCGAGGATTTTGAGGACCAGCAGGCGGCCAGTTCGTTGCC
CAGTTTAAACGGCAAAAAGAGGAGCCAACTAAACAAGCTCGTCGAGGAAC
TGCTTGACTTGGTGGAAAAGCAACCGGCGAATCCCAACGAGGAATGGAAG
CAGTACGGGCAGCTACAGGAGCTGCTCAAACAAATCATGATCCTGGAGGA
GCCACTCAGCCAAGCAGTGTGTCCGCAGATCAGCGATTCCCCCGACGATC
AGACCCGTCTGGCCAAAGTGGAGGCGTTCAGTGCGTGGGCCAAAGATGGC
GGAGTTCACAGTGAGGGACTGGAGATAGCCATCTTTCCCGGCTACCAACT
GGGTCTGCGGGCCACCCGACCGTTGGCCAAGGATGAGCTGGTGCTCAGCG
TGCCCCGGAAGCTCATCTTATCCGAGGAAAACAACTCCGATTGCCGCCTA
TTTGGCAAAATGACGCAGGCCACCCACTTGAACCTGGCCTATGATCTGGT
CATCGAGAAGATCCGTGGCGAGTTCAGCGAGTGGCGGCCCTACATTGATG
TTCTGCCTGCCAAATACAACACCGTGCTATACTTTACCACCAAGCAGATG
GAGCTCCTCCGGGGCACCGCTGCAGCCGCTCTGGCAATGCGTCAGTGTCG
CGTCATCGCCAAGCAGTACGCCTTCCTCTACAAGTACGCCCACACCATGA
CTGAGCCGAGCACCGGGAACAGGAGCCATCCGGGCGAAAGAGGCCTCTTT
TTCACGCAGCACGGACTCTGCTACAAGCTATACAGATGGGCCGTTTCCAC
AGTGATGACCCGGCAGAATTTGGTGCCCAGCGAAAAACAAGAATCAGAGG
ACGGGCCAAAATTGATCTCGGCTTTGATTCCGTACTGGGATATGGCGAAC
CATAGGCCGGGCAAGATAACCTCCTTCTATGCCACCGTGTCCAGGCAACT
GGAATGCACCGCTCAGGAAGCTGTTAACACTGGAGAACAGTTTTTCATCT
ACTATGGCGATCGGTCGAATACTGATCTTCTAGTGCACAATGGTTTCGTA
GACCCTAACAACACCAAGGACTATGTTAATATTCGTGTAGGCCTGAGTCT
CACGGACGCTCTTGCTGCGAAGAGGGCAAGCATTCTGGACAAGCTGAACA
TCCGGCACACCGCAGAGCTGCGTGTGCTGCCTGCGCCGGATTTCATTTCC
AAGGAGTTGCTGGCATTCGTTCGGGTTTTCAAGATGAGCGCCGAGCAGTT
GGATCACTGGTGCAGCGACTTGGACCGGGCCGGGGACCTGCTGCACATCG
ACTGCGCCCTGGAGACGGATCACGAGACACGAACGTGGCAGTTCCTGGAG
GACAGGTTGAAGCTGCTTCTGGCCGTCTTTAATAAGGAAATGCATGAGGC
CGACGAAGTGAAGGAGCTGGAACTCAAGGATGGCCAGGAGATCGAGCTCA
TGCTCTTCCTGTATCGCCGTTTAGAGCGAAGCATTCTCGCCGGAGCTTTA
CAATACGCCCAAGAGCATCGCAAGGTCTAGAAGCTTTCTAGACCAT
BS12390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32732-RA | 1614 | CG32732-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32732-RA | 2189 | CG32732-RA | 158..1772 | 16..1630 | 8075 | 100 | Plus |
| CG14431-RC | 7289 | CG14431-RC | 6184..7053 | 885..16 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6967724..6968593 | 885..16 | 4350 | 100 | Minus |
| X | 23542271 | X | 6958449..6958936 | 1630..1143 | 2440 | 100 | Minus |
| X | 23542271 | X | 6958989..6959249 | 1143..883 | 1305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1075..1148 | 21..99 | 140 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1155 | 26..80 | 139 | 76.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1183 | 31..121 | 138 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2380 | 36..109 | 138 | 68.4 | Plus |
BS12390.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:57 Download gff for
BS12390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32732-RA | 1..1614 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:22 Download gff for
BS12390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32732-RA | 122..1735 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:43 Download gff for
BS12390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32732-RA | 159..1772 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:57 Download gff for
BS12390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32732-RA | 115..1744 | 9..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:25 Download gff for
BS12390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32732-RA | 159..1772 | 17..1630 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:25 Download gff for
BS12390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6958449..6958935 | 1144..1630 | 100 | <- | Minus |
| X | 6958989..6959246 | 886..1143 | 100 | <- | Minus |
| X | 6967724..6968592 | 17..885 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:43 Download gff for
BS12390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6852482..6852968 | 1144..1630 | 100 | <- | Minus |
| arm_X | 6853022..6853279 | 886..1143 | 100 | <- | Minus |
| arm_X | 6861757..6862625 | 17..885 | 100 | | Minus |
BS12390.pep Sequence
Translation from 16 to 1629
> BS12390.pep
MGKNTKRNKKTKQQQQQPQQNGVTASASGTAVEDFEDQQAASSLPSLNGK
KRSQLNKLVEELLDLVEKQPANPNEEWKQYGQLQELLKQIMILEEPLSQA
VCPQISDSPDDQTRLAKVEAFSAWAKDGGVHSEGLEIAIFPGYQLGLRAT
RPLAKDELVLSVPRKLILSEENNSDCRLFGKMTQATHLNLAYDLVIEKIR
GEFSEWRPYIDVLPAKYNTVLYFTTKQMELLRGTAAAALAMRQCRVIAKQ
YAFLYKYAHTMTEPSTGNRSHPGERGLFFTQHGLCYKLYRWAVSTVMTRQ
NLVPSEKQESEDGPKLISALIPYWDMANHRPGKITSFYATVSRQLECTAQ
EAVNTGEQFFIYYGDRSNTDLLVHNGFVDPNNTKDYVNIRVGLSLTDALA
AKRASILDKLNIRHTAELRVLPAPDFISKELLAFVRVFKMSAEQLDHWCS
DLDRAGDLLHIDCALETDHETRTWQFLEDRLKLLLAVFNKEMHEADEVKE
LELKDGQEIELMLFLYRRLERSILAGALQYAQEHRKV*
BS12390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32732-PA | 537 | CG32732-PA | 1..537 | 1..537 | 2776 | 100 | Plus |
