BS12394.complete Sequence
797 bp assembled on 2006-11-01
GenBank Submission: FJ637157
> BS12394.complete
GAAGTTATCAGTCGACATGAGCAATACTCAGCACTTAACTATTGGCTCGC
CAAAGCCCGTATTTCCGGATGATGGGATCTTAAAGCTGTATTCGATGCGC
TTTTGCCCCTATGCACACCGTGTGCACCTGGTCCTGGATGCCAAAAAGAT
TCCCTACCACGCTATCTACATCAATCTTCGCGACAAACCCGAGTGGTTCT
CCCTGGTGAGCAGCTCCACAAAGGTGCCGGCACTGGAGCTGGTCAAGGAA
CAGGGAAATCCTGTGCTGATCGAGTCGCTCATTATTTGTGACTACTTGGA
CGAAAAGTATCCGGAGGTGCCATTGTATCCCAAGGATCTGCTTAAAAAAG
CCCAGGAGAAGATTTTAATCGAACGTTTCGGACAGTTCATCAATGCCTTC
TACTACCTGTTGCTGCACGACAATCCCGAGCAGCTGGTTGACACCGATCA
CTATGCCGGATTGGTCGTTTATGAGGAGGAACTGAAGCGACGTTGTACCA
AGTTCTTTGGTGGCGACAGCCCAGGCATGCTTGACTACATGATGTGGCCC
TGGTGCGAGCGCTTTGACTCTCTGAAATACACTTTTGAACAAAAATTCGA
ATTGAGTCCGGAACGTTTTCCCACTTTGATTAAGTGGCGCGACTTGATGA
TCCAGGATCGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCC
AAATACATGAACTCCCGGCGATCGGGCCAGGCCGATTATAATATGCTATA
CAATGAGGCCAAACGTGTCAAATTGGGGTAGAAGCTTTCTAGACCAT
BS12394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstO1-RA | 765 | CG6662-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
| se-RA | 732 | CG6781-PA | 70..180 | 86..196 | 195 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstO1-RA | 954 | CG6662-RA | 65..829 | 17..781 | 3825 | 100 | Plus |
| se-RA | 825 | CG6781-RA | 108..218 | 86..196 | 195 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8524134..8524718 | 628..44 | 2925 | 100 | Minus |
| 3L | 28110227 | 3L | 8523953..8524075 | 750..628 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 8520715..8520825 | 86..196 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:52:39 has no hits.
BS12394.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:58 Download gff for
BS12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6662-RA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:39 Download gff for
BS12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6662-RA | 60..827 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:04 Download gff for
BS12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO1-RA | 65..829 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:58 Download gff for
BS12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6662-RA | 60..827 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:08 Download gff for
BS12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO1-RA | 65..829 | 17..781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:08 Download gff for
BS12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8523867..8523897 | 751..781 | 100 | <- | Minus |
| 3L | 8523953..8524074 | 629..750 | 100 | <- | Minus |
| 3L | 8524134..8524717 | 45..628 | 100 | <- | Minus |
| 3L | 8524775..8524802 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:04 Download gff for
BS12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8516967..8516997 | 751..781 | 100 | <- | Minus |
| arm_3L | 8517053..8517174 | 629..750 | 100 | <- | Minus |
| arm_3L | 8517234..8517817 | 45..628 | 100 | <- | Minus |
| arm_3L | 8517875..8517902 | 17..44 | 100 | | Minus |
BS12394.pep Sequence
Translation from 16 to 780
> BS12394.pep
MSNTQHLTIGSPKPVFPDDGILKLYSMRFCPYAHRVHLVLDAKKIPYHAI
YINLRDKPEWFSLVSSSTKVPALELVKEQGNPVLIESLIICDYLDEKYPE
VPLYPKDLLKKAQEKILIERFGQFINAFYYLLLHDNPEQLVDTDHYAGLV
VYEEELKRRCTKFFGGDSPGMLDYMMWPWCERFDSLKYTFEQKFELSPER
FPTLIKWRDLMIQDRAVKCFYLDGQTHAKYMNSRRSGQADYNMLYNEAKR
VKLG*
BS12394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstO1-PA | 254 | CG6662-PA | 1..254 | 1..254 | 1370 | 100 | Plus |
| se-PA | 243 | CG6781-PA | 1..243 | 1..248 | 692 | 52.8 | Plus |
| GstO3-PA | 241 | CG6776-PA | 1..240 | 1..244 | 684 | 50.8 | Plus |
| GstO2-PB | 250 | CG6673-PB | 6..247 | 5..245 | 637 | 48.8 | Plus |
| GstO2-PA | 251 | CG6673-PA | 6..247 | 5..245 | 572 | 45.9 | Plus |
