BS12396.complete Sequence
674 bp assembled on 2006-11-01
GenBank Submission: FJ637159
> BS12396.complete
GAAGTTATCAGTCGACATGCGTAAGACGTGGGTGAAGCGAGAGAATATAT
ACTTCAAGCCCTTCTACAAGCAGAAGTCGAAGATGTTCCTGCTGCTGATC
TTCCTGGTCGGAATTTCGTTCATCGCGTATCAGGCCTTCTCGCTGAACCA
GCTGCCCGGAGTGCCTGCTCCGTGGAATCTGCAGCAGATCAAGCGCAAGC
ACCAGCAGATGATGCAGTCCCTGGGCAGCAAACAGCGCGACGTGGACGAT
TTCGATGGCGGAGGCGCCGATGCAGTTGCTCCGGCAGGCGGGGAAACCTC
ACCTGTTGCGGGTCACGAGGATCCCATCAAGATTGTCAGGGGCACACGGC
TCTTCGACTACGACGCCTACAAGCCCAACTTCGAGGGCAAGTTCCGGTGT
CTGGACGGCTCCAAAGAGATCCCGTTCGACCACCTGAACGACAACTACTG
CGACTGTGAGGAGGACGGCAGCGACGAGCCCAGCACGAATGCCTGCGCCA
AGGGGCGATTCTACTGTCGCTACCAGAAGCGTCACATCACGGGCCGGGGC
CTGGATATCTACGTGGCCAGCAGCCGCATTAATGACCACGTGTGCGACTG
CTGCGACGGCAGCGATGAGTGGAGCACGGCGACCAAGTGTCCCAACGACT
GTGCGTAGAAGCTTTCTAGACCAT
BS12396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7685-RA | 642 | CG7685-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
| CG7685-RB | 624 | CG7685-PB | 1..624 | 17..658 | 2905 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7685-RA | 940 | CG7685-RA | 104..745 | 17..658 | 3210 | 100 | Plus |
| CG7685-RB | 922 | CG7685-RB | 104..727 | 17..658 | 2905 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18405487..18405807 | 338..658 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 18405218..18405426 | 132..340 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 18405043..18405160 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:38:48 has no hits.
BS12396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:00 Download gff for
BS12396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:42 Download gff for
BS12396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 34..679 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:24 Download gff for
BS12396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 104..745 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:01 Download gff for
BS12396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 34..679 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:21 Download gff for
BS12396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 104..745 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:21 Download gff for
BS12396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18405043..18405159 | 17..133 | 100 | -> | Plus |
| 3R | 18405220..18405425 | 134..339 | 100 | -> | Plus |
| 3R | 18405489..18405807 | 340..658 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:24 Download gff for
BS12396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14230765..14230881 | 17..133 | 100 | -> | Plus |
| arm_3R | 14230942..14231147 | 134..339 | 100 | -> | Plus |
| arm_3R | 14231211..14231529 | 340..658 | 100 | | Plus |
BS12396.pep Sequence
Translation from 16 to 657
> BS12396.pep
MRKTWVKRENIYFKPFYKQKSKMFLLLIFLVGISFIAYQAFSLNQLPGVP
APWNLQQIKRKHQQMMQSLGSKQRDVDDFDGGGADAVAPAGGETSPVAGH
EDPIKIVRGTRLFDYDAYKPNFEGKFRCLDGSKEIPFDHLNDNYCDCEED
GSDEPSTNACAKGRFYCRYQKRHITGRGLDIYVASSRINDHVCDCCDGSD
EWSTATKCPNDCA*
BS12396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7685-PA | 213 | CG7685-PA | 1..213 | 1..213 | 1177 | 100 | Plus |
| CG7685-PB | 207 | CG7685-PB | 1..207 | 1..213 | 1131 | 97.2 | Plus |
| CG6453-PB | 548 | CG6453-PB | 34..130 | 109..212 | 250 | 48.6 | Plus |
| CG6453-PA | 548 | CG6453-PA | 34..130 | 109..212 | 250 | 48.6 | Plus |
