BS12406.complete Sequence
2567 bp assembled on 2009-12-07
GenBank Submission: KX806010
> BS12406.complete
GAAGTTATCAGTCGACATGGTCAACTTCACCGTCGACGAGATCCGTGGCC
TCATGGACAAGAAGCGGAACATCCGCAACATGTCTGTGATTGCCCACGTA
GACCACGGCAAGTCCACTCTGACCGATTCCCTTGTGTCGAAGGCTGGTAT
CATTGCCGGAGCCAAGGCTGGTGAGACTCGTTTCACTGACACCCGCAAGG
ACGAGCAGGAGCGCTGCATTACCATCAAGTCGACTGCCATTTCCATGTAC
TTTGAGGTGGAGGAAAAGGATCTGGTGTTCATTACCCACCCCGATCAGCG
CGAGAAGGAGTGCAAGGGTTTCCTGATCAACTTGATCGACTCGCCCGGTC
ACGTTGACTTCTCCTCGGAGGTGACCGCCGCCCTTCGTGTAACCGACGGT
GCACTCGTTGTTGTAGACTGCGTCTCCGGAGTTTGTGTCCAGACCGAAAC
CGTGCTGCGTCAGGCCATCGCTGAGCGTATTAAGCCCATCCTATTCATGA
ACAAAATGGACCGCGCTCTGCTTGAGCTGCAACTAGATGCCGAGGAGCTG
TACCAGACCTTCCAGCGCATCGTCGAGAACGTAAACGTTATCATTGCCAC
CTATAACGATGACGGAGGACCGATGGGTGAGGTTCGCGTGGATCCCTCTA
AGGGATCAGTGGGCTTCGGTTCTGGGCTTCACGGCTGGGCGTTCACCCTC
AAGCAGTTCTCTGAGATGTACTCCGAGAAATTCAAGATTGATGTTGTCAA
GCTAATGAACCGATTGTGGGGTGAAAACTTCTTTAACGCCAAGACCAAGA
AATGGCAGAAACAGAAAGAGGCTGACAACAAACGCTCGTTCTGCATGTAC
ATCCTGGACCCCATCTACAAGGTGTTCGATGCCATTATGAATTACAAGAA
GGAGGAGATAGGTACCTTGCTCGAGAAAATCGGTGTGACTCTGAAGCATG
AAGACAAGGACAAAGATGGCAAAGCTCTGCTGAAGACTGTGATGCGCACC
TGGCTGCCAGCCGGCGAGGCTTTACTTCAGATGATTGCTATTCATTTGCC
GTCGCCAGTGGTTGCCCAGAAGTACCGCATGGAGATGCTGTACGAAGGTC
CCCATGACGATGAGGCCGCTATCGCCGTTAAGTCTTGCGATCCTGATGGT
CCTCTAATGATGTACATTTCTAAGATGGTACCGACCTCTGACAAGGGTCG
CTTCTATGCTTTCGGTCGTGTGTTCGCCGGTAAGGTGGCCACCGGGCAAA
AGTGCCGAATCATGGGCCCCAACTACACTCCCGGCAAGAAGGAGGACTTA
TATGAGAAGGCTATTCAGCGCACAATTCTCATGATGGGTCGTTACGTCGA
GGCCATCGAGGATGTGCCCTCTGGCAACATTTGCGGTCTGGTCGGTGTTG
ATCAGTTCTTGGTTAAGACCGGTACGATTACCACCTTCAAGGACGCCCAC
AACATGAAGGTCATGAAGTTCTCCGTGTCCCCTGTGGTGCGCGTGGCTGT
TGAGCCAAAGAACCCCGCGGACTTGCCTAAGCTGGTGGAGGGCTTGAAGC
GTTTGGCTAAGTCCGATCCTATGGTGCAGTGTATCATCGAAGAGTCCGGC
GAGCATATCATTGCTGGTGCCGGTGAGCTGCATTTGGAGATCTGCCTTAA
GGATCTAGAGGAAGACCACGCTTGTATCCCACTGAAGAAGTCTGATCCCG
TCGTCTCCTACCGTGAGACTGTGTCGGAGGAGTCCGACCAGATGTGTCTG
TCCAAGTCGCCCAACAAGCACAACCGTCTGCTGATGAAAGCCCTACCTAT
GCCAGACGGTCTTCCCGAGGACATTGATAACGGCGATGTGAGTGCCAAGG
ATGAGTTCAAGGCTCGTGCCCGTTATTTGTCTGAGAAGTACGACTACGAT
GTGACTGAGGCCCGTAAGATCTGGTGCTTCGGCCCCGACGGAACCGGTCC
GAATTTCATCCTCGACTGTACCAAGTCCGTGCAGTACCTTAACGAAATCA
AGGACTCTGTTGTCGCTGGATTCCAATGGGCCTCAAAGGAGGGTATTTTA
GCCGACGAAAACTTGCGCGGTGTCCGCTTCAACATCTACGATGTGACACT
TCACGCTGATGCCATCCATCGTGGTGGTGGCCAGATCATTCCAACCACTC
GTCGTTGTCTGTACGCTGCCGCTATAACCGCCAAGCCGCGCCTGATGGAG
CCTGTTTACCTGTGCGAGATCCAGTGCCCCGAGGTTGCTGTAGGAGGAAT
ATACGGTGTGCTCAACAGGCGACGTGGCCATGTATTCGAGGAAAACCAGG
TTGTGGGCACTCCCATGTTCGTTGTGAAGGCATACCTGCCCGTCAACGAG
TCATTCGGTTTTACCGCCGATCTGCGCTCTAATACCGGAGGACAGGCCTT
CCCTCAATGTGTCTTCGATCATTGGCAGGTGTTGCCTGGCGATCCGAGCG
AGCCCTCAAGCAAGCCCTATGCCATCGTCCAGGATACTCGTAAGCGCAAG
GGTCTTAAGGAAGGATTGCCCGATCTATCCCAGTACTTGGACAAGTTGTA
AAAGCTTTCTAGACCAT
BS12406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 2535 | CG2238-PD | 1..2535 | 17..2551 | 12675 | 100 | Plus |
| EF2-RC | 2535 | CG2238-PC | 1..2535 | 17..2551 | 12675 | 100 | Plus |
| EF2-RA | 2535 | CG2238-PA | 1..2535 | 17..2551 | 12675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 3008 | CG2238-RD | 76..2611 | 17..2552 | 12680 | 100 | Plus |
| EF2-RC | 2819 | CG2238-RC | 124..2659 | 17..2552 | 12680 | 100 | Plus |
| EF2-RA | 2771 | CG2238-RA | 76..2611 | 17..2552 | 12680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21678310..21679404 | 2552..1458 | 5475 | 100 | Minus |
| 2L | 23513712 | 2L | 21679482..21680181 | 1461..762 | 3500 | 100 | Minus |
| 2L | 23513712 | 2L | 21680757..21681284 | 762..235 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 21681344..21681559 | 234..19 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:02:15 has no hits.
BS12406.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:46 Download gff for
BS12406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 110..2642 | 17..2549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:14 Download gff for
BS12406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 76..2608 | 17..2549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:56 Download gff for
BS12406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 110..2642 | 17..2549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:30 Download gff for
BS12406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EF2-RA | 76..2608 | 17..2549 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:30 Download gff for
BS12406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21678313..21679402 | 1460..2549 | 100 | <- | Minus |
| 2L | 21679484..21680180 | 763..1459 | 100 | <- | Minus |
| 2L | 21680757..21681284 | 235..762 | 100 | <- | Minus |
| 2L | 21681344..21681560 | 17..234 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:14 Download gff for
BS12406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21678313..21679402 | 1460..2549 | 100 | <- | Minus |
| arm_2L | 21679484..21680180 | 763..1459 | 100 | <- | Minus |
| arm_2L | 21680757..21681284 | 235..762 | 100 | <- | Minus |
| arm_2L | 21681344..21681560 | 17..234 | 99 | | Minus |
BS12406.pep Sequence
Translation from 16 to 2550
> BS12406.pep
MVNFTVDEIRGLMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK
AGETRFTDTRKDEQERCITIKSTAISMYFEVEEKDLVFITHPDQREKECK
GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQA
IAERIKPILFMNKMDRALLELQLDAEELYQTFQRIVENVNVIIATYNDDG
GPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYSEKFKIDVVKLMNRL
WGENFFNAKTKKWQKQKEADNKRSFCMYILDPIYKVFDAIMNYKKEEIGT
LLEKIGVTLKHEDKDKDGKALLKTVMRTWLPAGEALLQMIAIHLPSPVVA
QKYRMEMLYEGPHDDEAAIAVKSCDPDGPLMMYISKMVPTSDKGRFYAFG
RVFAGKVATGQKCRIMGPNYTPGKKEDLYEKAIQRTILMMGRYVEAIEDV
PSGNICGLVGVDQFLVKTGTITTFKDAHNMKVMKFSVSPVVRVAVEPKNP
ADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEED
HACIPLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLP
EDIDNGDVSAKDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILD
CTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFNIYDVTLHADAI
HRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCEIQCPEVAVGGIYGVLN
RRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVF
DHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLPDLSQYLDKL*
BS12406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-PD | 844 | CG2238-PD | 1..844 | 1..844 | 4411 | 100 | Plus |
| EF2-PC | 844 | CG2238-PC | 1..844 | 1..844 | 4411 | 100 | Plus |
| EF2-PA | 844 | CG2238-PA | 1..844 | 1..844 | 4411 | 100 | Plus |
| CG4849-PA | 975 | CG4849-PA | 116..957 | 4..842 | 1528 | 36.8 | Plus |
| CG33158-PB | 1033 | CG33158-PB | 12..410 | 12..389 | 633 | 36.6 | Plus |
