Clone BS12407 Report

Search the DGRC for BS12407

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG7916-RA
Protein status:BS12407.pep: full length peptide match
Sequenced Size:896

Clone Sequence Records

BS12407.complete Sequence

896 bp assembled on 2009-02-12

> BS12407.complete
GAAGTTATCAGTCGACATGAAAGCTATCGTTTGTGTTTTTGTGACCCTTT
TGGCCTGCGTAGCGGCCTACGATGTGGAGCTGCTCACCGAGGAGCAATGG
GACCAGCTGGTGGCGCGTAATCCCGCCAAGCCCGATACTCAGGGTCTGAT
CTTGAACGGATCGGTGAAGAAGGCCATCAATGGACTGCTGAACCAAATGC
CTTGTGGTTGGCCCCAATATGGAATTCCACCACTGGATCCCTACACCAAT
GCTGATCTCCGCATCCACTTGGCCGAGTCGGTTGTCGATACCCTGCTGCA
GTTCCTGCGCTTCCGTTTCGATGGCCTGGAAGGCATGGAGATCAAGAAGA
TGAAGGTCAGCTACACCTTTAGCAAGAAGGTCAAGTTCCACTTCAACTTC
CCAGAGCTGAAGGCCAGTGCCCACTATTTGGACACCAACACCTTTGTGAA
TCTGCTGAAGGAACTGGGATTGTCGGTGCGCTACGAGAGCTCGGGCCCAT
TGTCCTTCAGCCTGCAGAATCTGTCGATTCAGGGCGAGTTCAAGTACAAG
ATGCCCTTCATCTTTGGCTCCATCAAGATCTACAAGTTCAGTTGCGCCGT
CGGCTTGGGCGGTGTATCCTCGAACATTGGCGGTGTAATGGGAAATGGAA
GGATCAATGAGTTCATCAACGACATGCTCGACAAGGAGATCCCGGCCTTC
ATCAATGGCAACCAGGAACAGATCAGCGCCAAGATCGAGGAGATCTTTGT
GCCGCTGGCCAATGCGCATCTCACGGGTCACAAGATCTGGTATCTCTTTA
GCTTGCTGTCCGCCACCACTGGCAGTTGCAATCCCACTCCCGCTCCCTGG
TTGGCCATTGAGTCCAGGAAGCTAGACTAAAAGCTTTCTAGACCAT

BS12407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-RA 864 CG7916-PA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-RA 923 CG7916-RA 27..890 17..880 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13847175..13847766 289..880 2960 100 Plus
2L 23513712 2L 13846954..13847119 123..288 830 100 Plus
2L 23513712 2L 13846778..13846883 17..122 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:20:06 has no hits.

BS12407.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:23 Download gff for BS12407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 22..883 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:29 Download gff for BS12407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 27..888 17..878 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:09 Download gff for BS12407.complete
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 27..888 17..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:09 Download gff for BS12407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13846778..13846883 17..122 100 -> Plus
2L 13846954..13847119 123..288 100 -> Plus
2L 13847175..13847764 289..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:29 Download gff for BS12407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13846778..13846883 17..122 100 -> Plus
arm_2L 13846954..13847119 123..288 100 -> Plus
arm_2L 13847175..13847764 289..878 100   Plus

BS12407.pep Sequence

Translation from 16 to 879

> BS12407.pep
MKAIVCVFVTLLACVAAYDVELLTEEQWDQLVARNPAKPDTQGLILNGSV
KKAINGLLNQMPCGWPQYGIPPLDPYTNADLRIHLAESVVDTLLQFLRFR
FDGLEGMEIKKMKVSYTFSKKVKFHFNFPELKASAHYLDTNTFVNLLKEL
GLSVRYESSGPLSFSLQNLSIQGEFKYKMPFIFGSIKIYKFSCAVGLGGV
SSNIGGVMGNGRINEFINDMLDKEIPAFINGNQEQISAKIEEIFVPLANA
HLTGHKIWYLFSLLSATTGSCNPTPAPWLAIESRKLD*

BS12407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-PA 287 CG7916-PA 1..287 1..287 1499 100 Plus
CG7953-PB 297 CG7953-PB 36..296 19..278 434 36.3 Plus
CG7953-PA 297 CG7953-PA 36..296 19..278 434 36.3 Plus
CG8997-PB 260 CG8997-PB 28..229 46..252 277 31.4 Plus
CG8997-PA 260 CG8997-PA 28..229 46..252 277 31.4 Plus