BS12409.complete Sequence
2654 bp assembled on 2009-08-24
GenBank Submission: KX800347
> BS12409.complete
GAAGTTATCAGTCGACATGTCCGGTTCAGGTGGTGTGGCCAACTCGTCCT
CCACAGCGGCGGCCAACAATACCGCCGCCACATTCCAGCACATCTTCGAG
CAGCTGGTACAGCAGGGCGGCGGAAACCACAAGCTGCCCCCCAAGCAGCT
GGAGCAACTGCGTCACCTGCTCGGCAACGTGAGGGACGCCAAGAATCTGC
AGATGATCGTGGAGAAGTTCAAGAATCTGGAGCAGTTCCACGAGCACTAC
GCCGCCCACCTGGCTAACAACAACACTGTGATCTCAACGGAAGATAGCAA
CGACTTGGTTAAGGATAATGCCAGGAAGTATGGATCTGGTGGACAAACGC
TAACGCCCCGCCACACAATCGATGCCATTCTGGGCCTAAAGAATCGCAAT
GGCGCGGCGAATGGCAGTGGCAGGAATCCGGAAACGGTCAGCGATGGCTC
CGTTGATCCCTCCCTGGGTGACGATGATGCCACTGATCTACGCTGCGGCA
TGACCCTGACGCAGTTGCGCAGCATGGACAATCACATGGCCAGTATGCTG
CAGCAGCACGCGAAAAACGGCGGAGCCCTGCCCTACGGTCCACCAACTCC
GCCGGGGGGTCAGCAGCCCCAGGTGCCGAATGCCACGCCCCTGCACCATG
GACAACAGATGGGCGGCCAGGCGGGACATGCAACACATGCCGGACATGGT
CATCCTACGCATCATGGGCATGCGCCCTTCGGCTATCATAATGCATTTGG
CTTTGGCCAGGGCGGTCATGGGTATGGGCATCCGGAGGAGGCGGCGGGCA
ATTACCTCAATTCGATGCACCAGATGGTCGAGGCCAATCAATTGCAGACC
GGAGCCAATGGGGCCAATCCACCGCCCGCTCCGCTGCCGCCCAGTTCCTT
TGGCAGTCATCAGCAGCATTTGGCCGCCTTGGCGGCTCAGGCGCAGGAGC
AGCAGAATCAACACAGCAAATACGCCAAGTCATCGCCCACTGGAGCGGGT
CCTCCTCCACCGCCGGGTGCCTACTTTATGGAATCCCAGACGGCGCCTGT
CGCCCCGTCGCAAATCAACTACGACGAGCGTTCAATGTCCTCGGCCAGCG
ATTTGGAGGAGGATGACGATGATGCGGCAAAGTTGCAGCTCGATGTGACC
TCGCCGCCCACTCCGTCGCCACGTGGTCAGCTGGCCGCCAAGCGCAAGTC
CGCCGGCGTCTTCTGTGATGATAATGAGCCAAAATTAGCCAACGGTCAGT
TGCCAGGCGGCAATTACGGCATTCGTCCGCGCAGCATGGAGGAGGTGCAT
CATCAGCAGCAATCGCATCACCATCAACAACAACAGCAGCAGCAGCAACA
GCAACAGCAACTGCAACAGCAGCAGGGCTTTCAGCACGACTTTCGCAACA
GTGGCAATGGGAATCCCAATGGCAACAGCAATTCCGGCGATCATGGCGAG
CGTTTGAACGCGGATAGCGACAGCTTGGTCAACGGCAGCTGTGCCTCCAG
CGAGGATCTCAACCAGACCAACAGCAGCGAGCAGGGCGAGAAGATCACCT
CCGGCAGCGACGACGAAGGTCAAGATGACAACTGCGCCAAGAAGAAACAC
CGTCGCAATCGGACCACCTTCACCACCTACCAGCTCCATGAGCTGGAGCG
GGCCTTCGAGAAGTCCCACTACCCCGATGTCTATTCCCGCGAGGAGCTGG
CCATGAAGGTGAACCTGCCCGAGGTCCGCGTCCAGGTGTGGTTCCAGAAT
CGCCGCGCCAAGTGGCGTCGCCAGGAGAAATCGGAGAGTCTTCGCCTGGG
CCTGACCCACTTCACCCAGCTGCCACATCGCCTGGGATGCGGTGCATCCG
GACTGCCCGTGGATCCCTGGCTATCACCACCACTGCTCAGCGCATTGCCA
GGCTTTCTCTCGCATCCGCAGACTGTGTACCCAAGCTATCTGACGCCGCC
GCTCAGCCTGGCGCCCGGAAATCTGACCATGAGCAGTCTGGCGGCCATGG
GCCACCACCATGCCCACAATGGGCCGCCGCCCCCGCACGTGGGTCACGGG
GGACATGGTCAGCCGCAGCCACCGCCACCGCCGCCGCCCCACGGAGTGCC
CCACCCACATGGCAGCCACCATGTGGTACCCCTTTCTCACCTCTCGCCGC
ACCTGTCACGCATGTCGCCGCATGCGACGTCCTTGGGCTCGCCCCACCAC
GGAGTGACCCCCCTCGGCACGCCGCTGCACAGCAGTCTGCCGCCCAGTTC
GACAGCCACCACCGTGGCCGTCTCATCCTCGCAGTCGTCCTCCTCCTCCG
CCTCGCTGGAGTGCAGCGGTCCGGATGTCTGCATGTCGCCGCAGAACCTG
AGCATTGGCAATGCCGATTCCAATGGCGATGGACGCGACCTGAGCAGCGA
CCTGGATGCCGGCAGCACCAGCAGCAATCCCGGCAGTAGTCTGGACAAGT
GCGCGGCCAGCGCCAACATAGAGCTGCTCGATGTGGGCCGGGATAGCCCA
CCACCTCCGCCCACTCCGACTGGCAAGGGTTCGAGCACACCGCCGACGGA
CATGCGAAGCAACTCGATCGCCACGCTGAGGATCAAGGCCAAGGAGCACC
TGGACAACCTGAACAAGGGAATGGTATCCATTGTCTAGAAGCTTTCTAGA
CCAT
BS12409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-RB | 2714 | CG10052-PB | 92..2714 | 16..2638 | 13115 | 100 | Plus |
| CG11294-RB | 786 | CG11294-PB | 69..239 | 1597..1767 | 285 | 77.8 | Plus |
| CG11294-RA | 786 | CG11294-PA | 69..239 | 1597..1767 | 285 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-RB | 3267 | CG10052-RB | 388..3010 | 16..2638 | 13115 | 100 | Plus |
| CG11294-RB | 1291 | CG11294-RB | 226..396 | 1597..1767 | 285 | 77.8 | Plus |
| CG11294-RA | 1068 | CG11294-RA | 226..396 | 1597..1767 | 285 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20922458..20923582 | 446..1570 | 5625 | 100 | Plus |
| 2R | 25286936 | 2R | 20936034..20936773 | 1899..2638 | 3700 | 100 | Plus |
| 2R | 25286936 | 2R | 20917140..20917417 | 16..293 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 20923753..20923924 | 1567..1738 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 20935678..20935849 | 1731..1902 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 20918455..20918610 | 292..447 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 18237836..18237990 | 1613..1767 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:29:20 has no hits.
BS12409.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:00 Download gff for
BS12409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RA | 362..2983 | 17..2638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:05 Download gff for
BS12409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 389..3010 | 17..2638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:45 Download gff for
BS12409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 389..3010 | 17..2638 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:45 Download gff for
BS12409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20917141..20917417 | 17..293 | 100 | -> | Plus |
| 2R | 20918457..20918609 | 294..446 | 100 | -> | Plus |
| 2R | 20922459..20923580 | 447..1568 | 100 | -> | Plus |
| 2R | 20923755..20923921 | 1569..1735 | 100 | -> | Plus |
| 2R | 20935683..20935848 | 1736..1901 | 100 | -> | Plus |
| 2R | 20936037..20936773 | 1902..2638 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:05 Download gff for
BS12409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16804646..16804922 | 17..293 | 100 | -> | Plus |
| arm_2R | 16805962..16806114 | 294..446 | 100 | -> | Plus |
| arm_2R | 16811260..16811426 | 1569..1735 | 100 | -> | Plus |
| arm_2R | 16823188..16823353 | 1736..1901 | 100 | -> | Plus |
| arm_2R | 16809964..16811085 | 447..1568 | 100 | -> | Plus |
| arm_2R | 16823542..16824278 | 1902..2638 | 100 | | Plus |
BS12409.pep Sequence
Translation from 16 to 2637
> BS12409.pep
MSGSGGVANSSSTAAANNTAATFQHIFEQLVQQGGGNHKLPPKQLEQLRH
LLGNVRDAKNLQMIVEKFKNLEQFHEHYAAHLANNNTVISTEDSNDLVKD
NARKYGSGGQTLTPRHTIDAILGLKNRNGAANGSGRNPETVSDGSVDPSL
GDDDATDLRCGMTLTQLRSMDNHMASMLQQHAKNGGALPYGPPTPPGGQQ
PQVPNATPLHHGQQMGGQAGHATHAGHGHPTHHGHAPFGYHNAFGFGQGG
HGYGHPEEAAGNYLNSMHQMVEANQLQTGANGANPPPAPLPPSSFGSHQQ
HLAALAAQAQEQQNQHSKYAKSSPTGAGPPPPPGAYFMESQTAPVAPSQI
NYDERSMSSASDLEEDDDDAAKLQLDVTSPPTPSPRGQLAAKRKSAGVFC
DDNEPKLANGQLPGGNYGIRPRSMEEVHHQQQSHHHQQQQQQQQQQQQLQ
QQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQ
TNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKS
HYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFT
QLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYPSYLTPPLSLAP
GNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGS
HHVVPLSHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSSTATTV
AVSSSQSSSSSASLECSGPDVCMSPQNLSIGNADSNGDGRDLSSDLDAGS
TSSNPGSSLDKCAASANIELLDVGRDSPPPPPTPTGKGSSTPPTDMRSNS
IATLRIKAKEHLDNLNKGMVSIV*
BS12409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-PB | 904 | CG10052-PB | 32..904 | 1..873 | 4702 | 100 | Plus |
| al-PA | 408 | CG3935-PA | 67..390 | 510..861 | 375 | 33.5 | Plus |
| hbn-PA | 409 | CG33152-PA | 87..365 | 429..705 | 332 | 34.7 | Plus |
| ey-PB | 624 | CG1464-PB | 164..549 | 499..860 | 300 | 29.5 | Plus |
| ey-PA | 838 | CG1464-PA | 378..763 | 499..860 | 300 | 29.5 | Plus |
