Clone BS12411 Report

Search the DGRC for BS12411

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptTsp66E-RA
Protein status:BS12411.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12411.complete Sequence

836 bp assembled on 2006-11-01

GenBank Submission: FJ637162

> BS12411.complete
GAAGTTATCAGTCGACATGGTCTTCGACTGCGGAGTCTGGTGTGCAAAGT
ATTTGCTTTGCATATTCAATTTTATATTTTTCGTGCTAGGCACAATTATA
TTCGGAGTCGGACTATGGCTGGCCGTGGACAAGCACTCGCTGATTGCTCT
CCTCAAGTTGGTCGAGAGCGAGCGCATTGAGCAATTTACACAGCCACAGG
CCATAGAGCAGCTGGCCTATGTGCTCCTCGTCATCGGAGCCGTCATGTTC
TTCATGAGCTTCTTGGGCTATCTGGGAGCCATGCGCGAGTCCCGCTGTCT
GCTGTCGACGTATGGAACCTTTTTGATCCTGCTGCTGATTGCCGAGATCG
TTGCCGGCGGATTGGGTGCCTTCTTCAAGGACAAAGTTCGTGCCGAGAGC
AAAAACTTCTTGCAGACGACCATTACCAGTTATTCGCTGGGCGAGAATGT
GGATGCTACCTCACTGATGTGGAACCAACTGATGGGCAACTTTGGGTGCT
GTGGCATCAATGACTATCACGATTTTGATGCCTCTCCAGCGTGGGTGAAC
GGCAAGGGTAACCGCACCATTCCCGATGCCTGCTGTATCCTTAAGGATGT
GGCCAAGTTGGTGCCACGCGACGAGGACTGTACAACCAACCCCAGCGACA
GCAACAGTTTCTACAAGAAGGGCTGCTATGAGGTGTTTACCGAGTGGCTG
ATTCGGCAACGTGAACTGGTCATCGTGGCCATTGCGGTGGGCATTGTGCA
CCTGGTCCTCATTATTCTGGCCTTTGCTCTGTGCAAGGCCTTTGCCAAAT
ACAACGATATGCGTCTGTAAAAGCTTTCTAGACCAT

BS12411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-RC 804 CG4999-PC 1..804 17..820 4020 100 Plus
Tsp66E-RA 804 CG4999-PA 1..804 17..820 4020 100 Plus
Tsp66E-RB 804 CG4999-PB 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-RC 2287 CG4999-RC 368..1172 17..821 4025 100 Plus
Tsp66E-RA 2261 CG4999-RA 342..1146 17..821 4025 100 Plus
Tsp66E-RB 2155 CG4999-RB 236..1040 17..821 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8930379..8930748 310..679 1820 99.5 Plus
3L 28110227 3L 8930798..8930950 669..821 765 100 Plus
3L 28110227 3L 8928014..8928144 180..310 655 100 Plus
3L 28110227 3L 8926696..8926794 83..181 495 100 Plus
3L 28110227 3L 8926127..8926194 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:54:24 has no hits.

BS12411.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:02 Download gff for BS12411.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RC 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:44 Download gff for BS12411.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RC 358..1170 9..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:38 Download gff for BS12411.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 236..1037 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:02 Download gff for BS12411.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RC 358..1170 9..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:06 Download gff for BS12411.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 236..1037 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:06 Download gff for BS12411.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8928016..8928144 182..310 100 -> Plus
3L 8926127..8926192 17..82 100 -> Plus
3L 8926696..8926794 83..181 100 -> Plus
3L 8930380..8930739 311..670 100 -> Plus
3L 8930800..8930947 671..818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:38 Download gff for BS12411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8919227..8919292 17..82 100 -> Plus
arm_3L 8919796..8919894 83..181 100 -> Plus
arm_3L 8921116..8921244 182..310 100 -> Plus
arm_3L 8923480..8923839 311..670 100 -> Plus
arm_3L 8923900..8924047 671..818 100   Plus

BS12411.pep Sequence

Translation from 16 to 819

> BS12411.pep
MVFDCGVWCAKYLLCIFNFIFFVLGTIIFGVGLWLAVDKHSLIALLKLVE
SERIEQFTQPQAIEQLAYVLLVIGAVMFFMSFLGYLGAMRESRCLLSTYG
TFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQTTITSYSLGENVDATSL
MWNQLMGNFGCCGINDYHDFDASPAWVNGKGNRTIPDACCILKDVAKLVP
RDEDCTTNPSDSNSFYKKGCYEVFTEWLIRQRELVIVAIAVGIVHLVLII
LAFALCKAFAKYNDMRL*

BS12411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-PC 267 CG4999-PC 1..267 1..267 1398 100 Plus
Tsp66E-PA 267 CG4999-PA 1..267 1..267 1398 100 Plus
Tsp66E-PB 267 CG4999-PB 1..267 1..267 1398 100 Plus
Tsp74F-PB 236 CG5492-PB 8..228 4..254 249 27.9 Plus
Tsp74F-PA 236 CG5492-PA 8..228 4..254 249 27.9 Plus