BS12411.complete Sequence
836 bp assembled on 2006-11-01
GenBank Submission: FJ637162
> BS12411.complete
GAAGTTATCAGTCGACATGGTCTTCGACTGCGGAGTCTGGTGTGCAAAGT
ATTTGCTTTGCATATTCAATTTTATATTTTTCGTGCTAGGCACAATTATA
TTCGGAGTCGGACTATGGCTGGCCGTGGACAAGCACTCGCTGATTGCTCT
CCTCAAGTTGGTCGAGAGCGAGCGCATTGAGCAATTTACACAGCCACAGG
CCATAGAGCAGCTGGCCTATGTGCTCCTCGTCATCGGAGCCGTCATGTTC
TTCATGAGCTTCTTGGGCTATCTGGGAGCCATGCGCGAGTCCCGCTGTCT
GCTGTCGACGTATGGAACCTTTTTGATCCTGCTGCTGATTGCCGAGATCG
TTGCCGGCGGATTGGGTGCCTTCTTCAAGGACAAAGTTCGTGCCGAGAGC
AAAAACTTCTTGCAGACGACCATTACCAGTTATTCGCTGGGCGAGAATGT
GGATGCTACCTCACTGATGTGGAACCAACTGATGGGCAACTTTGGGTGCT
GTGGCATCAATGACTATCACGATTTTGATGCCTCTCCAGCGTGGGTGAAC
GGCAAGGGTAACCGCACCATTCCCGATGCCTGCTGTATCCTTAAGGATGT
GGCCAAGTTGGTGCCACGCGACGAGGACTGTACAACCAACCCCAGCGACA
GCAACAGTTTCTACAAGAAGGGCTGCTATGAGGTGTTTACCGAGTGGCTG
ATTCGGCAACGTGAACTGGTCATCGTGGCCATTGCGGTGGGCATTGTGCA
CCTGGTCCTCATTATTCTGGCCTTTGCTCTGTGCAAGGCCTTTGCCAAAT
ACAACGATATGCGTCTGTAAAAGCTTTCTAGACCAT
BS12411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-RC | 804 | CG4999-PC | 1..804 | 17..820 | 4020 | 100 | Plus |
Tsp66E-RA | 804 | CG4999-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Tsp66E-RB | 804 | CG4999-PB | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-RC | 2287 | CG4999-RC | 368..1172 | 17..821 | 4025 | 100 | Plus |
Tsp66E-RA | 2261 | CG4999-RA | 342..1146 | 17..821 | 4025 | 100 | Plus |
Tsp66E-RB | 2155 | CG4999-RB | 236..1040 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8930379..8930748 | 310..679 | 1820 | 99.5 | Plus |
3L | 28110227 | 3L | 8930798..8930950 | 669..821 | 765 | 100 | Plus |
3L | 28110227 | 3L | 8928014..8928144 | 180..310 | 655 | 100 | Plus |
3L | 28110227 | 3L | 8926696..8926794 | 83..181 | 495 | 100 | Plus |
3L | 28110227 | 3L | 8926127..8926194 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:54:24 has no hits.
BS12411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:45:02 Download gff for
BS12411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RC | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:44 Download gff for
BS12411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RC | 358..1170 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:38 Download gff for
BS12411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 236..1037 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:45:02 Download gff for
BS12411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RC | 358..1170 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:06 Download gff for
BS12411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 236..1037 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:06 Download gff for
BS12411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8928016..8928144 | 182..310 | 100 | -> | Plus |
3L | 8926127..8926192 | 17..82 | 100 | -> | Plus |
3L | 8926696..8926794 | 83..181 | 100 | -> | Plus |
3L | 8930380..8930739 | 311..670 | 100 | -> | Plus |
3L | 8930800..8930947 | 671..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:38 Download gff for
BS12411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8919227..8919292 | 17..82 | 100 | -> | Plus |
arm_3L | 8919796..8919894 | 83..181 | 100 | -> | Plus |
arm_3L | 8921116..8921244 | 182..310 | 100 | -> | Plus |
arm_3L | 8923480..8923839 | 311..670 | 100 | -> | Plus |
arm_3L | 8923900..8924047 | 671..818 | 100 | | Plus |
BS12411.pep Sequence
Translation from 16 to 819
> BS12411.pep
MVFDCGVWCAKYLLCIFNFIFFVLGTIIFGVGLWLAVDKHSLIALLKLVE
SERIEQFTQPQAIEQLAYVLLVIGAVMFFMSFLGYLGAMRESRCLLSTYG
TFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQTTITSYSLGENVDATSL
MWNQLMGNFGCCGINDYHDFDASPAWVNGKGNRTIPDACCILKDVAKLVP
RDEDCTTNPSDSNSFYKKGCYEVFTEWLIRQRELVIVAIAVGIVHLVLII
LAFALCKAFAKYNDMRL*
BS12411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-PC | 267 | CG4999-PC | 1..267 | 1..267 | 1398 | 100 | Plus |
Tsp66E-PA | 267 | CG4999-PA | 1..267 | 1..267 | 1398 | 100 | Plus |
Tsp66E-PB | 267 | CG4999-PB | 1..267 | 1..267 | 1398 | 100 | Plus |
Tsp74F-PB | 236 | CG5492-PB | 8..228 | 4..254 | 249 | 27.9 | Plus |
Tsp74F-PA | 236 | CG5492-PA | 8..228 | 4..254 | 249 | 27.9 | Plus |