Clone BS12414 Report

Search the DGRC for BS12414

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptTsp29Fa-RA
Protein status:BS12414.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12414.complete Sequence

779 bp assembled on 2006-11-01

GenBank Submission: FJ637164

> BS12414.complete
GAAGTTATCAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGA
AGTATACGCTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATC
TTGATTGCCGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCT
CTTCCTGGCCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTG
GATCGTTCATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAG
GAGAACTATTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTT
CATCCTGGAGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACG
CCTCCGATTTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAAC
AGTATCAATCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGA
GTTCGAGTGCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCC
CTAACGGCGACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTG
GGCACATTCACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAA
AGTTGGATGCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCA
GCCTAGGAGCTGCAGGGGTGGTCATTGCCATCCTCCAGTTCTTTGGCGTA
ATCTTTGCCTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTAC
TGGTTTTATGTAGAAGCTTTCTAGACCAT

BS12414.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-RC 747 CG9494-PC 1..747 17..763 3735 100 Plus
Tsp29Fa-RB 747 CG9494-PB 1..747 17..763 3735 100 Plus
Tsp29Fa-RA 747 CG9494-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-RC 1052 CG9494-RC 167..913 17..763 3735 100 Plus
Tsp29Fa-RB 1247 CG9494-RB 362..1108 17..763 3735 100 Plus
Tsp29Fa-RA 963 CG9494-RA 78..824 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8935151..8935754 85..688 3020 100 Plus
2L 23513712 2L 8935878..8935957 684..763 400 100 Plus
2L 23513712 2L 8934990..8935058 17..85 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:09:45 has no hits.

BS12414.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:46 Download gff for BS12414.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:26 Download gff for BS12414.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RB 146..900 9..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:48 Download gff for BS12414.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 78..824 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:47 Download gff for BS12414.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 70..824 9..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:13 Download gff for BS12414.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 78..824 17..763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:13 Download gff for BS12414.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8934990..8935058 17..85 100 -> Plus
2L 8935152..8935754 86..688 100 -> Plus
2L 8935883..8935957 689..763 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:48 Download gff for BS12414.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8934990..8935058 17..85 100 -> Plus
arm_2L 8935152..8935754 86..688 100 -> Plus
arm_2L 8935883..8935957 689..763 100   Plus

BS12414.pep Sequence

Translation from 16 to 762

> BS12414.pep
MSLLTGSANAVKYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGK
FFSIPTFLIVIGSFIIIISFFGCWGALKENYCLVLSFSVMLAIIFILELA
AGISGYVLRNDASDLIKTSLTYSLNEYNSINPNATTKLWDDIQDEFECCG
VTSYNDWITAFPNGDLPISCCNVHVGAVGTFTCNNAQSSVADRHKVGCLD
GFSGYISAHAVSLGAAGVVIAILQFFGVIFACYIAREIKIRNGITGFM*

BS12414.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-PC 248 CG9494-PC 1..248 1..248 1286 100 Plus
Tsp29Fa-PB 248 CG9494-PB 1..248 1..248 1286 100 Plus
Tsp29Fa-PA 248 CG9494-PA 1..248 1..248 1286 100 Plus
Tsp47F-PB 239 CG9033-PB 9..234 11..239 400 37.4 Plus
Tsp39D-PB 235 CG8666-PB 1..229 3..239 352 29.5 Plus