BS12414.complete Sequence
779 bp assembled on 2006-11-01
GenBank Submission: FJ637164
> BS12414.complete
GAAGTTATCAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGA
AGTATACGCTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATC
TTGATTGCCGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCT
CTTCCTGGCCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTG
GATCGTTCATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAG
GAGAACTATTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTT
CATCCTGGAGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACG
CCTCCGATTTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAAC
AGTATCAATCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGA
GTTCGAGTGCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCC
CTAACGGCGACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTG
GGCACATTCACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAA
AGTTGGATGCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCA
GCCTAGGAGCTGCAGGGGTGGTCATTGCCATCCTCCAGTTCTTTGGCGTA
ATCTTTGCCTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTAC
TGGTTTTATGTAGAAGCTTTCTAGACCAT
BS12414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-RC | 747 | CG9494-PC | 1..747 | 17..763 | 3735 | 100 | Plus |
Tsp29Fa-RB | 747 | CG9494-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
Tsp29Fa-RA | 747 | CG9494-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-RC | 1052 | CG9494-RC | 167..913 | 17..763 | 3735 | 100 | Plus |
Tsp29Fa-RB | 1247 | CG9494-RB | 362..1108 | 17..763 | 3735 | 100 | Plus |
Tsp29Fa-RA | 963 | CG9494-RA | 78..824 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8935151..8935754 | 85..688 | 3020 | 100 | Plus |
2L | 23513712 | 2L | 8935878..8935957 | 684..763 | 400 | 100 | Plus |
2L | 23513712 | 2L | 8934990..8935058 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:09:45 has no hits.
BS12414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:46 Download gff for
BS12414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:26 Download gff for
BS12414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RB | 146..900 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:48 Download gff for
BS12414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 78..824 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:47 Download gff for
BS12414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 70..824 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:13 Download gff for
BS12414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 78..824 | 17..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:13 Download gff for
BS12414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8934990..8935058 | 17..85 | 100 | -> | Plus |
2L | 8935152..8935754 | 86..688 | 100 | -> | Plus |
2L | 8935883..8935957 | 689..763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:48 Download gff for
BS12414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8934990..8935058 | 17..85 | 100 | -> | Plus |
arm_2L | 8935152..8935754 | 86..688 | 100 | -> | Plus |
arm_2L | 8935883..8935957 | 689..763 | 100 | | Plus |
BS12414.pep Sequence
Translation from 16 to 762
> BS12414.pep
MSLLTGSANAVKYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGK
FFSIPTFLIVIGSFIIIISFFGCWGALKENYCLVLSFSVMLAIIFILELA
AGISGYVLRNDASDLIKTSLTYSLNEYNSINPNATTKLWDDIQDEFECCG
VTSYNDWITAFPNGDLPISCCNVHVGAVGTFTCNNAQSSVADRHKVGCLD
GFSGYISAHAVSLGAAGVVIAILQFFGVIFACYIAREIKIRNGITGFM*
BS12414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-PC | 248 | CG9494-PC | 1..248 | 1..248 | 1286 | 100 | Plus |
Tsp29Fa-PB | 248 | CG9494-PB | 1..248 | 1..248 | 1286 | 100 | Plus |
Tsp29Fa-PA | 248 | CG9494-PA | 1..248 | 1..248 | 1286 | 100 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 9..234 | 11..239 | 400 | 37.4 | Plus |
Tsp39D-PB | 235 | CG8666-PB | 1..229 | 3..239 | 352 | 29.5 | Plus |