Clone BS12416 Report

Search the DGRC for BS12416

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG7091-RB
Protein status:BS12416.pep: gold
Sequenced Size:16

Clone Sequence Records

BS12416.complete Sequence

1598 bp assembled on 2006-11-01

GenBank Submission: FJ637166

> BS12416.complete
GAAGTTATCAGTCGACATGTGCTGGAGGCTGTGCCTCCTCCACCGCTACG
CCATGAGCAGCATGTCATGGACCCTGCCACGCCTCTCGCAGTCCAGTGCA
TCCACCGCCCACGGACTAGTGGGTTCCGTTCGCCTGACCTACGCCATATG
TGCCTTTTTGGCAACTTGCCTACACGCCGCCATGAGGAACATGCTCGGCA
TGATCATCCTCAAGATGGTCATGCCCCGGCCGGAGGATGCACTGGTCGTT
CCAGCGGGGTTGAGTCGCCTAACGGAGGGCAATGTCACCTCCACGGGTCG
ATGTGGATCTCCTCGGGTCGTTTTCAATCCGCAGATTCAAGAGACTCAGT
CGGGCGACTTACCATGGACCCGAAACCAGGAGCTGACCTTCCCAGGTGTC
TACTACTATGGCTACGTGGTTTCCATCTCGCTATCCGGCTATCTGGCAGA
TCGGTGCAGCAGCAAGCGGCTGTTCATCGTGTCCCTGATCTTCGAGGCTG
TGGCCTACATACTGCTCCCAGCAATGGCGCACTCTAGTTTCGAGGCCGGA
GTGGTTGATCTGGTCATCTGTGGTTTACTGGCGGGCTGTGGAAATCCGGC
AATGTATAAACTGTTCGTGACCTGGGCTCATCCCACAGAGAGAACAGCGC
TCCTGTCCTTCGCCTACAGTGGTCTTCTGATGGGCTCCATGTTGGTTTAC
CCGGTGGCCAGTTATCTGAGCAACTTCGGCTGGGAACTGTCCTTCTATGT
AGTCGGTGGAGTTGGCCTCTCATTCGGCATTGCCTGCTGCTTTCTCGTTT
ACGACACCGTGGAGCAACATCCAAGGATATCGAATGAGGAGGTGGATTAC
CTGAGGCAGGGCAAGAGTCAATTGGGACAGCAGCGGCAGCCAGTGGTAAC
CATTCCCTGGAAGAGCCTGCTCGCCGCGCCGCCCGTCTACGCCTTCATCC
TGACCCACATGTTCCACACCTACACCTTCCTGGTGATTGTGCAACTGATG
CCGCGATTTATGCGCGAGGCCATGGAGTTCGATCTCCGCGAGGTGGGCTT
CCTCTCGGCGGCGCCGTATCTGGGCGGGATCTGCTCGAAGGTGATGTGCA
TCCTGGGTGGCAGCTATGTGGAACGACGCGTGGGTCCTGACCAGAATTGT
GTGCGAAGAATGCTGTACGGGATCTGCAGCATCCTGACCACTTCTTTGAT
TGGGGTCATCATCCTGGCTAATTGTGATGACAAAATACTAGTACTTGTGA
TGTTTGCCTTCATGATGGCCACTACGGATATGGGTTTCAGTGGCTACTGG
CCCACGCTGCTCTACTTTGCGCCCTCCTTCGCGGGATTGCTATCGGGATT
GGCCAATGGAATGGCCCATCTTTCCGGATTCTTAGCTCCCCATCTTGTGG
CCGCTCTGGTCCACACTGGCAGCAAGGATGAGTGGAATGTGGTGTTGATG
ACGCTGATTGTCTTTAATACGATGGCCATGTTGGTATTTGCATTTTGCAG
CAGTACGAACCTACAACCTTGGGATCCTCGTAGCAGAATGGAGAAAACTG
CATCACCAAGTGCTCAGGAATCAAATAGTTAGAAGCTTTCTAGACCAT

BS12416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7091-RB 1530 CG7091-PB 1..1530 53..1582 7650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7091-RB 1880 CG7091-RB 197..1762 17..1582 7830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12978196..12978528 17..349 1665 100 Plus
3R 32079331 3R 12979168..12979480 583..895 1565 100 Plus
3R 32079331 3R 12979536..12979819 893..1176 1420 100 Plus
3R 32079331 3R 12979955..12980197 1176..1418 1215 100 Plus
3R 32079331 3R 12978874..12979111 347..584 1190 100 Plus
3R 32079331 3R 12980253..12980417 1418..1582 825 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:21:32 has no hits.

BS12416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:49 Download gff for BS12416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7091-RA 1..1566 17..1582 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:29 Download gff for BS12416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7091-RB 230..1808 8..1588 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:56 Download gff for BS12416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7091-RB 197..1762 17..1582 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:49 Download gff for BS12416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7091-RA 230..1808 8..1588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:47 Download gff for BS12416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7091-RB 197..1762 17..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:47 Download gff for BS12416.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12980253..12980417 1418..1582 100   Plus
3R 12979955..12980196 1176..1417 100 -> Plus
3R 12978196..12978528 17..349 100 -> Plus
3R 12978877..12979110 350..583 100 -> Plus
3R 12979169..12979477 584..892 100 -> Plus
3R 12979536..12979818 893..1175 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:56 Download gff for BS12416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8803918..8804250 17..349 100 -> Plus
arm_3R 8804599..8804832 350..583 100 -> Plus
arm_3R 8804891..8805199 584..892 100 -> Plus
arm_3R 8805258..8805540 893..1175 100 -> Plus
arm_3R 8805677..8805918 1176..1417 100 -> Plus
arm_3R 8805975..8806139 1418..1582 100   Plus

BS12416.pep Sequence

Translation from 16 to 1581

> BS12416.pep
MCWRLCLLHRYAMSSMSWTLPRLSQSSASTAHGLVGSVRLTYAICAFLAT
CLHAAMRNMLGMIILKMVMPRPEDALVVPAGLSRLTEGNVTSTGRCGSPR
VVFNPQIQETQSGDLPWTRNQELTFPGVYYYGYVVSISLSGYLADRCSSK
RLFIVSLIFEAVAYILLPAMAHSSFEAGVVDLVICGLLAGCGNPAMYKLF
VTWAHPTERTALLSFAYSGLLMGSMLVYPVASYLSNFGWELSFYVVGGVG
LSFGIACCFLVYDTVEQHPRISNEEVDYLRQGKSQLGQQRQPVVTIPWKS
LLAAPPVYAFILTHMFHTYTFLVIVQLMPRFMREAMEFDLREVGFLSAAP
YLGGICSKVMCILGGSYVERRVGPDQNCVRRMLYGICSILTTSLIGVIIL
ANCDDKILVLVMFAFMMATTDMGFSGYWPTLLYFAPSFAGLLSGLANGMA
HLSGFLAPHLVAALVHTGSKDEWNVVLMTLIVFNTMAMLVFAFCSSTNLQ
PWDPRSRMEKTASPSAQESNS*

BS12416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7091-PB 509 CG7091-PB 1..509 13..521 2648 100 Plus
CG3036-PB 493 CG3036-PB 17..470 37..503 489 28 Plus
CG3036-PA 493 CG3036-PA 17..470 37..503 489 28 Plus
MFS10-PB 559 CG4330-PB 53..545 24..502 435 25.3 Plus
MFS10-PC 559 CG4330-PC 53..545 24..502 435 25.3 Plus