BS12416.complete Sequence
1598 bp assembled on 2006-11-01
GenBank Submission: FJ637166
> BS12416.complete
GAAGTTATCAGTCGACATGTGCTGGAGGCTGTGCCTCCTCCACCGCTACG
CCATGAGCAGCATGTCATGGACCCTGCCACGCCTCTCGCAGTCCAGTGCA
TCCACCGCCCACGGACTAGTGGGTTCCGTTCGCCTGACCTACGCCATATG
TGCCTTTTTGGCAACTTGCCTACACGCCGCCATGAGGAACATGCTCGGCA
TGATCATCCTCAAGATGGTCATGCCCCGGCCGGAGGATGCACTGGTCGTT
CCAGCGGGGTTGAGTCGCCTAACGGAGGGCAATGTCACCTCCACGGGTCG
ATGTGGATCTCCTCGGGTCGTTTTCAATCCGCAGATTCAAGAGACTCAGT
CGGGCGACTTACCATGGACCCGAAACCAGGAGCTGACCTTCCCAGGTGTC
TACTACTATGGCTACGTGGTTTCCATCTCGCTATCCGGCTATCTGGCAGA
TCGGTGCAGCAGCAAGCGGCTGTTCATCGTGTCCCTGATCTTCGAGGCTG
TGGCCTACATACTGCTCCCAGCAATGGCGCACTCTAGTTTCGAGGCCGGA
GTGGTTGATCTGGTCATCTGTGGTTTACTGGCGGGCTGTGGAAATCCGGC
AATGTATAAACTGTTCGTGACCTGGGCTCATCCCACAGAGAGAACAGCGC
TCCTGTCCTTCGCCTACAGTGGTCTTCTGATGGGCTCCATGTTGGTTTAC
CCGGTGGCCAGTTATCTGAGCAACTTCGGCTGGGAACTGTCCTTCTATGT
AGTCGGTGGAGTTGGCCTCTCATTCGGCATTGCCTGCTGCTTTCTCGTTT
ACGACACCGTGGAGCAACATCCAAGGATATCGAATGAGGAGGTGGATTAC
CTGAGGCAGGGCAAGAGTCAATTGGGACAGCAGCGGCAGCCAGTGGTAAC
CATTCCCTGGAAGAGCCTGCTCGCCGCGCCGCCCGTCTACGCCTTCATCC
TGACCCACATGTTCCACACCTACACCTTCCTGGTGATTGTGCAACTGATG
CCGCGATTTATGCGCGAGGCCATGGAGTTCGATCTCCGCGAGGTGGGCTT
CCTCTCGGCGGCGCCGTATCTGGGCGGGATCTGCTCGAAGGTGATGTGCA
TCCTGGGTGGCAGCTATGTGGAACGACGCGTGGGTCCTGACCAGAATTGT
GTGCGAAGAATGCTGTACGGGATCTGCAGCATCCTGACCACTTCTTTGAT
TGGGGTCATCATCCTGGCTAATTGTGATGACAAAATACTAGTACTTGTGA
TGTTTGCCTTCATGATGGCCACTACGGATATGGGTTTCAGTGGCTACTGG
CCCACGCTGCTCTACTTTGCGCCCTCCTTCGCGGGATTGCTATCGGGATT
GGCCAATGGAATGGCCCATCTTTCCGGATTCTTAGCTCCCCATCTTGTGG
CCGCTCTGGTCCACACTGGCAGCAAGGATGAGTGGAATGTGGTGTTGATG
ACGCTGATTGTCTTTAATACGATGGCCATGTTGGTATTTGCATTTTGCAG
CAGTACGAACCTACAACCTTGGGATCCTCGTAGCAGAATGGAGAAAACTG
CATCACCAAGTGCTCAGGAATCAAATAGTTAGAAGCTTTCTAGACCAT
BS12416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7091-RB | 1530 | CG7091-PB | 1..1530 | 53..1582 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7091-RB | 1880 | CG7091-RB | 197..1762 | 17..1582 | 7830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12978196..12978528 | 17..349 | 1665 | 100 | Plus |
3R | 32079331 | 3R | 12979168..12979480 | 583..895 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 12979536..12979819 | 893..1176 | 1420 | 100 | Plus |
3R | 32079331 | 3R | 12979955..12980197 | 1176..1418 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 12978874..12979111 | 347..584 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 12980253..12980417 | 1418..1582 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:21:32 has no hits.
BS12416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:49 Download gff for
BS12416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7091-RA | 1..1566 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:29 Download gff for
BS12416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7091-RB | 230..1808 | 8..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:56 Download gff for
BS12416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7091-RB | 197..1762 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:49 Download gff for
BS12416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7091-RA | 230..1808 | 8..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:47 Download gff for
BS12416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7091-RB | 197..1762 | 17..1582 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:47 Download gff for
BS12416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12980253..12980417 | 1418..1582 | 100 | | Plus |
3R | 12979955..12980196 | 1176..1417 | 100 | -> | Plus |
3R | 12978196..12978528 | 17..349 | 100 | -> | Plus |
3R | 12978877..12979110 | 350..583 | 100 | -> | Plus |
3R | 12979169..12979477 | 584..892 | 100 | -> | Plus |
3R | 12979536..12979818 | 893..1175 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:56 Download gff for
BS12416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8803918..8804250 | 17..349 | 100 | -> | Plus |
arm_3R | 8804599..8804832 | 350..583 | 100 | -> | Plus |
arm_3R | 8804891..8805199 | 584..892 | 100 | -> | Plus |
arm_3R | 8805258..8805540 | 893..1175 | 100 | -> | Plus |
arm_3R | 8805677..8805918 | 1176..1417 | 100 | -> | Plus |
arm_3R | 8805975..8806139 | 1418..1582 | 100 | | Plus |
BS12416.pep Sequence
Translation from 16 to 1581
> BS12416.pep
MCWRLCLLHRYAMSSMSWTLPRLSQSSASTAHGLVGSVRLTYAICAFLAT
CLHAAMRNMLGMIILKMVMPRPEDALVVPAGLSRLTEGNVTSTGRCGSPR
VVFNPQIQETQSGDLPWTRNQELTFPGVYYYGYVVSISLSGYLADRCSSK
RLFIVSLIFEAVAYILLPAMAHSSFEAGVVDLVICGLLAGCGNPAMYKLF
VTWAHPTERTALLSFAYSGLLMGSMLVYPVASYLSNFGWELSFYVVGGVG
LSFGIACCFLVYDTVEQHPRISNEEVDYLRQGKSQLGQQRQPVVTIPWKS
LLAAPPVYAFILTHMFHTYTFLVIVQLMPRFMREAMEFDLREVGFLSAAP
YLGGICSKVMCILGGSYVERRVGPDQNCVRRMLYGICSILTTSLIGVIIL
ANCDDKILVLVMFAFMMATTDMGFSGYWPTLLYFAPSFAGLLSGLANGMA
HLSGFLAPHLVAALVHTGSKDEWNVVLMTLIVFNTMAMLVFAFCSSTNLQ
PWDPRSRMEKTASPSAQESNS*
BS12416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7091-PB | 509 | CG7091-PB | 1..509 | 13..521 | 2648 | 100 | Plus |
CG3036-PB | 493 | CG3036-PB | 17..470 | 37..503 | 489 | 28 | Plus |
CG3036-PA | 493 | CG3036-PA | 17..470 | 37..503 | 489 | 28 | Plus |
MFS10-PB | 559 | CG4330-PB | 53..545 | 24..502 | 435 | 25.3 | Plus |
MFS10-PC | 559 | CG4330-PC | 53..545 | 24..502 | 435 | 25.3 | Plus |