BS12418.complete Sequence
635 bp assembled on 2006-11-01
GenBank Submission: FJ637168
> BS12418.complete
GAAGTTATCAGTCGACATGTCCAGCATGGGTGATCAGCGCGGGACACGGG
TGTATGTCGGCAATCTGACCGACAAAGTGAAAAAGGATGATCTGGAGGGG
GAGTTCACAAAGTATGGCAAGCTGAATTCGGTGTGGATAGCCTTCAATCC
GCCGGGATTTGCGTTCGTCGAGTTCGAGCACCGCGACGACGCCGAAAAGG
CGTGCGACATACTGAACGGATCCGAGCTGCTCGGCTCCCAGCTGCGCGTG
GAGATCTCAAAAGGGCGGCCACGCCAGGGTAGGCGTGGCGGACCCATGGA
CAGGGGCGGACGACGCGGCGACTTTGGCCGGCACAGCATCACAAGCGGTG
GTAGCGGCGGAGGCGGTTTCCGGCAGCGCGGATCCAGCGGATCCTCAAGC
CGGCACACGGAGCGGGGCTATAGCTCCGGCCGATCAGGTGCAAGCAGCTA
TAATGGCAGAGAGGGCGGCGGCAGCGGCTTCAATCGCCGCGAGGTTTACG
GCGGTGGACGCGACAGCAGCCGCTACAGCAGCGGAAGTAGCGCCAGCTAC
GGACGCACTGGTGGTCAGTCGGCCGGACGCTTCAGGTCCCGCTCGCCGGT
GGGAAACCATCGATTCTAAAAGCTTTCTAGACCAT
BS12418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-RB | 603 | CG5655-PB | 1..603 | 17..619 | 3015 | 100 | Plus |
| Rsf1-RA | 603 | CG5655-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-RB | 1760 | CG5655-RB | 137..739 | 17..619 | 3015 | 100 | Plus |
| Rsf1-RA | 914 | CG5655-RA | 137..739 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10262816..10263418 | 619..17 | 3015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:00 has no hits.
BS12418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:35 Download gff for
BS12418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:57 Download gff for
BS12418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 160..767 | 12..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:07 Download gff for
BS12418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 137..737 | 17..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:20 Download gff for
BS12418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 137..737 | 17..617 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:20 Download gff for
BS12418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10262818..10263418 | 17..617 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:07 Download gff for
BS12418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10262818..10263418 | 17..617 | 100 | | Minus |
BS12418.pep Sequence
Translation from 16 to 618
> BS12418.pep
MSSMGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAF
VEFEHRDDAEKACDILNGSELLGSQLRVEISKGRPRQGRRGGPMDRGGRR
GDFGRHSITSGGSGGGGFRQRGSSGSSSRHTERGYSSGRSGASSYNGREG
GGSGFNRREVYGGGRDSSRYSSGSSASYGRTGGQSAGRFRSRSPVGNHRF
*
BS12418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-PB | 200 | CG5655-PB | 1..200 | 1..200 | 1058 | 100 | Plus |
| Rsf1-PA | 200 | CG5655-PA | 1..200 | 1..200 | 1058 | 100 | Plus |
| Rbp1-like-PC | 158 | CG1987-PC | 12..157 | 11..148 | 286 | 44.5 | Plus |
| Rbp1-like-PA | 158 | CG1987-PA | 12..157 | 11..148 | 286 | 44.5 | Plus |
| Rbp1-like-PB | 247 | CG1987-PB | 12..144 | 11..181 | 280 | 43.3 | Plus |
