BS12420.complete Sequence
488 bp assembled on 2006-11-01
GenBank Submission: FJ637169
> BS12420.complete
GAAGTTATCAGTCGACATGTCTATCGGAGTGCCCATTAAAGTTCTGCACG
AGGCCGAGGGCCACATAATCACTTGCGAAACCATCACCGGCGAGGTGTAC
CGCGGCAAACTCATCGAGGCGGAGGACAACATGAACTGCCAAATGACCCA
GATCACGGTGACCTACCGAGACGGACGCACCGCCAACCTGGAGAACGTCT
ACATTCGCGGCTCCAAGATCCGATTCCTTATACTGCCCGACATGCTGAAA
AATGCCCCGATGTTCAAGAAGCAGACGGGCAAGGGACTTGGTGGGACGGC
GGGACGGGGCAAGGCGGCCATTCTGCGCGCACAGGCTCGTGGCAGAGGAA
GAGGCGGACCTCCGGGCGGCGGAAGGGGCACTGGTGGACCGCCAGGAGCT
CCCGGCGGCAGCGGCGGACGCGGAGCATGGCAGGGAGGACCAACCGGCGG
TCGAGGACGCGGCGGCCTGTAGAAGCTTTCTAGACCAT
BS12420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-RA | 456 | CG8427-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-RA | 744 | CG8427-RA | 145..602 | 15..472 | 2290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12168875..12169195 | 15..335 | 1605 | 100 | Plus |
| 2R | 25286936 | 2R | 12169724..12169861 | 335..472 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:03:59 has no hits.
BS12420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:34 Download gff for
BS12420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:18 Download gff for
BS12420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 145..617 | 10..482 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:33 Download gff for
BS12420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 147..602 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:34 Download gff for
BS12420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 145..617 | 10..482 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:12 Download gff for
BS12420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 147..602 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:12 Download gff for
BS12420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12168877..12169195 | 17..335 | 100 | -> | Plus |
| 2R | 12169725..12169861 | 336..472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:33 Download gff for
BS12420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8056382..8056700 | 17..335 | 100 | -> | Plus |
| arm_2R | 8057230..8057366 | 336..472 | 100 | | Plus |
BS12420.pep Sequence
Translation from 16 to 471
> BS12420.pep
MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTY
RDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKA
AILRAQARGRGRGGPPGGGRGTGGPPGAPGGSGGRGAWQGGPTGGRGRGG
L*
BS12420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-PA | 151 | CG8427-PA | 1..151 | 1..151 | 805 | 100 | Plus |
| CG17768-PB | 154 | CG17768-PB | 2..143 | 5..147 | 157 | 29.9 | Plus |
| CG17768-PA | 154 | CG17768-PA | 2..143 | 5..147 | 157 | 29.9 | Plus |
| SmD1-PA | 124 | CG10753-PA | 8..118 | 7..121 | 139 | 32.5 | Plus |
