Clone BS12424 Report

Search the DGRC for BS12424

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptsala-RA
Protein status:BS12424.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12424.complete Sequence

461 bp assembled on 2006-11-01

GenBank Submission: FJ637171

> BS12424.complete
GAAGTTATCAGTCGACATGAAACTACTGATTGCTCTGTTTGCACTGGTGA
CCGCTGTGAACGCTCAGAATGGATTCGGCCAAGTTGGACAAGGAGGATAT
GGAGGGCAAGGAGGATTTGGAGGATTCGGAGGAATCGGCGGGCAAGCAGG
TTTTGGTGGACAAATAGGATTCACTGGACAGGGTGGAGTTGGTGGCCAGG
TGGGAATTGGTCAAGGCGGAGTCCACCCGGGTCAAGGAGGATTCGCTGGA
CAAGGTTCTCCAAACCAATATCAGCCTGGTTACGGAAGTCCTGTGGGATC
TGGCCATTTCCATGGAACTAATCCAGTTGAGTCCGGTCATTTTCACGAAA
ATCCTCATGAATATCCGGAACATCATGGCGATCATCACCGTGAACATCAT
GAGCACCATGGACACCACGAACATCATGGACATCATAGACATTAGAAGCT
TTCTAGACCAT

BS12424.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
sala-RC 429 CG4922-PC 1..429 17..445 2145 100 Plus
sala-RA 429 CG4922-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG43355-RC 1697 CG43355-RC 1028..1456 17..445 2145 100 Plus
sala-RC 1697 CG4922-RC 1028..1456 17..445 2145 100 Plus
sala-RA 698 CG4922-RA 29..457 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11486284..11486708 21..445 2095 99.5 Plus
Blast to na_te.dros performed 2014-11-27 14:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2429..2451 12..34 106 95.7 Plus

BS12424.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:22 Download gff for BS12424.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:17 Download gff for BS12424.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 13..450 8..445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:28 Download gff for BS12424.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 29..457 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:22 Download gff for BS12424.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 13..450 8..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:21 Download gff for BS12424.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 29..457 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:21 Download gff for BS12424.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11486282..11486708 17..445 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:28 Download gff for BS12424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11486282..11486708 17..445 99   Plus

BS12424.pep Sequence

Translation from 16 to 444

> BS12424.pep
MKLLIALFALVTAVNAQNGFGQVGQGGYGGQGGFGGFGGIGGQAGFGGQI
GFTGQGGVGGQVGIGQGGVHPGQGGFAGQGSPNQYQPGYGSPVGSGHFHG
TNPVESGHFHENPHEYPEHHGDHHREHHEHHGHHEHHGHHRH*

BS12424.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
sala-PC 142 CG4922-PC 1..142 1..142 826 100 Plus
sala-PA 142 CG4922-PA 1..142 1..142 826 100 Plus
CG8157-PB 113 CG8157-PB 1..111 1..138 238 48.2 Plus
CG8157-PA 113 CG8157-PA 1..111 1..138 238 48.2 Plus
CG7299-PC 177 CG7299-PC 68..131 17..83 203 61.2 Plus