Clone BS12427 Report

Search the DGRC for BS12427

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG13704-RA
Protein status:BS12427.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12427.complete Sequence

443 bp assembled on 2006-11-01

GenBank Submission: FJ637173

> BS12427.complete
GAAGTTATCAGTCGACATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGG
TGATATGCCTGGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACG
CGACGTGTGAACCGCGGACGACGCACCCTTACCCGCAGATACTTCACTGG
CCTTGCTATTCCCGGATGGGCTCTCATCGTTTGTGTAGCGGTAGGTGAGC
TGCTGATTGGTGGAGCCCTCTACTTCATCCTCAAGAAGGTGATCCTGGAC
AAGGAACCAGATCAGACGGCGGCCTCCTACACGCCCGCCCAGACTCATGC
GACGGCCACACCTTATACTCCCGCCCAGACTCACGATCCGGCCACGGCCA
CAACCTATACTCCTGCCCAGACTCATGAGACGGCCAATGTGACTCCCACT
CCAACGCATGCCACCGCTATTGTCTGAAAGCTTTCTAGACCAT

BS12427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-RA 411 CG13704-PA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-RA 682 CG13704-RA 98..508 17..427 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4900415..4900695 147..427 1405 100 Plus
3L 28110227 3L 4900276..4900360 62..146 425 100 Plus
3L 28110227 3L 4898997..4899042 17..62 230 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:46:18 has no hits.

BS12427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:37 Download gff for BS12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 1..411 17..427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:16 Download gff for BS12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..508 14..427 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:06 Download gff for BS12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 98..507 17..426 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:37 Download gff for BS12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..508 14..427 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:18 Download gff for BS12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 98..507 17..426 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:18 Download gff for BS12427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4898997..4899042 17..62 100 -> Plus
3L 4900277..4900360 63..146 100 -> Plus
3L 4900415..4900694 147..426 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:06 Download gff for BS12427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4900415..4900694 147..426 100   Plus
arm_3L 4898997..4899042 17..62 100 -> Plus
arm_3L 4900277..4900360 63..146 100 -> Plus

BS12427.pep Sequence

Translation from 16 to 426

> BS12427.pep
MKLAKKCSTYLVICLVLLACCLQESEATRRVNRGRRTLTRRYFTGLAIPG
WALIVCVAVGELLIGGALYFILKKVILDKEPDQTAASYTPAQTHATATPY
TPAQTHDPATATTYTPAQTHETANVTPTPTHATAIV*

BS12427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-PA 136 CG13704-PA 1..136 1..136 709 100 Plus