BS12428.complete Sequence
1211 bp assembled on 2006-11-01
GenBank Submission: FJ637174
> BS12428.complete
GAAGTTATCAGTCGACATGGATCCCCAAACATCAAAAGTATGCCAAACGC
TTAATTTTACAATAGCAAGGCGAACTGCAGAAGCTCCCGTGAAGCTTGTA
TCCCATGAAGTCTCACTTTCAGACAGTACTACTTCTTTGGAGCTGAGCAA
TTGCTGCCGCTTGTGTTTGGAGGAGCCGTATCCCAACCAAATGCTGGACA
TGACCGTCATCTATGACCAGGAGGCGGCGCTGAGTTACTACGACTGCTAC
GAGATCTGCACCAAGGAAGACCTGCGGCAAAATCCCAAAAACGAGCCACG
AACCTTGTGCAAACGTTGTGCGGTGGAACTGAAATGGGCCTACGACTTCC
ACAAGAAAATGGCCATTGCCAATCAGCAGTTGAGGGAGATATTTGTGGCA
ACCGAAGCCAACACGGAACAGGAAGACGACGTGGAGGATGAGGAGAATGA
GGCGGATATGAATGAAGAGTTCCTGATGGAAGAGATTGAGGAGAAGCAGG
AAACCCCTATCGACAGCTTAGAGGACATTGTGCCACGCAATCGGCATACG
GGAAAATCCAACTGCAAGTTCTGCCACAAGGAGTTCAGGAACCATTCCCG
CATGGCCAAGCACCAGATGATTCATTTGGCCAATCGTCCCAACTTTCGTT
GCAGCCAGTGCGACCGGGTTTACCTCACAAAGCAGGCGCTGAAAGTTCAC
GTCGATTCGAAGCACAGGCAGTCTGGAGTCCACTGCGACACATGCGGCAA
GGTTTTTGCCATTGCCAAAGCCCTGGAGATTCATAAACGCTATCATAACA
GAGACTTTCCCTATTCCTGTGATCTCTGTGATCGTCGTTTCGCACAGCGA
TCCCATTTGACTGTCCACCAGCAGGTTAAGCACTCTGGATCTCGCTTCAT
TTGCGAGTTTCCCGGCTGCCAGAAGTCCTTTACCTCATCTTCATCTCTCA
GGAATCACGAGTGCACGCATACGGCCATGCCATTTGAGTGCGCCCACTGC
CATCAGAGCTATCCAGCTCGTAACAAACTACGCATGCACCTGGAGCGTAA
GCATAACATGGTGGTGCAGATGGAGGACCTGGAGGAAATGCGAAAGTTTC
ACATCGTGCGCTCCAAGTTGGTAATGGCAAAGATTTACTCGGACCAGAAA
GAATCACACCATGCCAAAAATGATAGCGCTGCTATTTCTAAATAAAAGCT
TTCTAGACCAT
BS12428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-RC | 1179 | CG4730-PC | 1..1179 | 17..1195 | 5895 | 100 | Plus |
| CG4730-RA | 1179 | CG4730-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
| CG4730-RB | 1005 | CG4730-PB | 1..1005 | 191..1195 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-RC | 1502 | CG4730-RC | 98..1278 | 17..1197 | 5905 | 100 | Plus |
| CG4730-RA | 1492 | CG4730-RA | 88..1268 | 17..1197 | 5905 | 100 | Plus |
| CG4730-RB | 1397 | CG4730-RB | 97..1173 | 121..1197 | 5385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25677528..25678537 | 1026..17 | 5050 | 100 | Minus |
| 3R | 32079331 | 3R | 25677296..25677466 | 1197..1027 | 855 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:59 has no hits.
BS12428.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:38 Download gff for
BS12428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 1..1179 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:18 Download gff for
BS12428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 80..1275 | 9..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:58 Download gff for
BS12428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 88..1264 | 17..1193 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:38 Download gff for
BS12428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 80..1275 | 9..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:17 Download gff for
BS12428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 88..1264 | 17..1193 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:17 Download gff for
BS12428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25677300..25677466 | 1027..1193 | 100 | <- | Minus |
| 3R | 25677528..25678537 | 17..1026 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:58 Download gff for
BS12428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21503022..21503188 | 1027..1193 | 100 | <- | Minus |
| arm_3R | 21503250..21504259 | 17..1026 | 100 | | Minus |
BS12428.pep Sequence
Translation from 16 to 1194
> BS12428.pep
MDPQTSKVCQTLNFTIARRTAEAPVKLVSHEVSLSDSTTSLELSNCCRLC
LEEPYPNQMLDMTVIYDQEAALSYYDCYEICTKEDLRQNPKNEPRTLCKR
CAVELKWAYDFHKKMAIANQQLREIFVATEANTEQEDDVEDEENEADMNE
EFLMEEIEEKQETPIDSLEDIVPRNRHTGKSNCKFCHKEFRNHSRMAKHQ
MIHLANRPNFRCSQCDRVYLTKQALKVHVDSKHRQSGVHCDTCGKVFAIA
KALEIHKRYHNRDFPYSCDLCDRRFAQRSHLTVHQQVKHSGSRFICEFPG
CQKSFTSSSSLRNHECTHTAMPFECAHCHQSYPARNKLRMHLERKHNMVV
QMEDLEEMRKFHIVRSKLVMAKIYSDQKESHHAKNDSAAISK*
BS12428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-PC | 392 | CG4730-PC | 1..392 | 1..392 | 2115 | 100 | Plus |
| CG4730-PA | 392 | CG4730-PA | 1..392 | 1..392 | 2115 | 100 | Plus |
| CG4730-PB | 334 | CG4730-PB | 1..334 | 59..392 | 1812 | 100 | Plus |
| CG7372-PA | 971 | CG7372-PA | 574..836 | 130..362 | 292 | 28.9 | Plus |
| Meics-PB | 571 | CG8474-PB | 279..447 | 174..342 | 283 | 31.4 | Plus |
