BS12429.complete Sequence
794 bp assembled on 2006-11-01
GenBank Submission: FJ637175
> BS12429.complete
GAAGTTATCAGTCGACATGCTGAAGTTCGTGATCTTGTTGTCTGCAGTAG
CCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGAAGCCACTCCTGCGGTGGATCCATCTACT
CCAGCAACGTCATCGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCCGTCCTGCAGATCCGTGCTGGATCCAGCTACTGGAGCTCCGGCGGTGT
CACCTTCTCTGTGTCCTCCTTCAAGAACCACGAGGGCTACAACGCCAACA
CCATGGTCAACGACATTGCCATCATCAAGATCAACGGCGCCCTGACCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
CGCTGCGGCCTCCGTCTCCGGATGGGGCACTCTCTCCTACGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAGCACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTTATTAGCAATGCCTAAAAGCTTTCTAGACCAT
BS12429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTry-RA | 762 | CG30028-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
| deltaTry-RA | 762 | CG12351-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG30031-RA | 762 | CG30031-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaTry-RA | 810 | CG12351-RA | 14..778 | 16..780 | 3825 | 100 | Plus |
| gammaTry-RA | 810 | CG30028-RA | 15..777 | 16..778 | 3815 | 100 | Plus |
| CG30031-RA | 811 | CG30031-RA | 16..778 | 16..778 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11355332..11356096 | 16..780 | 3825 | 100 | Plus |
| 2R | 25286936 | 2R | 11349094..11349856 | 778..16 | 3815 | 100 | Minus |
| 2R | 25286936 | 2R | 11350826..11351588 | 16..778 | 3815 | 100 | Plus |
| 2R | 25286936 | 2R | 11353598..11354360 | 778..16 | 3755 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11344347..11345093 | 762..16 | 2640 | 90.2 | Minus |
| 2R | 25286936 | 2R | 11346341..11347103 | 16..778 | 2420 | 87.8 | Plus |
| 2R | 25286936 | 2R | 11345695..11346014 | 369..50 | 325 | 73.4 | Minus |
| 2R | 25286936 | 2R | 11345320..11345442 | 744..622 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:11 has no hits.
BS12429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:39 Download gff for
BS12429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30031-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:20 Download gff for
BS12429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaTry-RA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:15 Download gff for
BS12429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaTry-RA | 15..774 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:39 Download gff for
BS12429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaTry-RA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:09 Download gff for
BS12429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaTry-RA | 15..774 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:09 Download gff for
BS12429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11350827..11351586 | 17..776 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:15 Download gff for
BS12429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7238332..7239091 | 17..776 | 100 | | Plus |
BS12429.pep Sequence
Translation from 16 to 777
> BS12429.pep
MLKFVILLSAVACALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSSNVIVTAAHCLQSVSASVLQIRAGSSYWSSGGVTFSVS
SFKNHEGYNANTMVNDIAIIKINGALTFSSTIKAIGLASSNPANGAAASV
SGWGTLSYGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRSTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAALRSWVI
SNA*
BS12429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTry-PA | 253 | CG30028-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
| deltaTry-PA | 253 | CG12351-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
| CG30031-PA | 253 | CG30031-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
| CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 1288 | 99.6 | Plus |
| alphaTry-PA | 256 | CG18444-PA | 1..253 | 1..253 | 1178 | 88.9 | Plus |
