BS12430.complete Sequence
1625 bp assembled on 2007-10-17
GenBank Submission: FJ637176
> BS12430.complete
GAAGTTATCAGTCGACATGGAACAGCTATTGGCCCAATTACACACTTGCA
GTGAGCTGATTGCAGAGGGCTACAGCAGCACCGGCAACATTGGCTGGCTG
AACGAGTTCTGCGCCACTTTCCTGGACTTCGCCAGCGATCTGAAGGCTAG
GCTGCCGGAGGTGGCGCCCAGTGGCGCAAACCTTGATGTGGAGACCATCT
TCCTGTGCCTCACCCAGGTGGTAACCTGCATCACCCACCTAGAGCGGACC
ATCAGCATGGAGGCACCGCATATGACCAGGCAGCACTTCCTCGACCGCTT
GGACTGGTGCTTGCGGCGACTGCTCGTCTCCTTGACGCAACTGGAAGGCA
ACGTGACCCCAGTCAAGAACCTAGAGGATCACTCCTTCGTTGAGCTCATG
GACCTGGCTCTGGACCACTTGGATGACTACATGGAGAAGCTGGCCCAGCA
GAGAAACAACTCGCTGCACATTCTAGAAGAGAGCTTCACGGAAGACACCT
ACCAGCTGGCCAGCATAGTTAATCACATCGTTCGCCACGCCCTGGCCTTT
GCCAATGTGGCCATTCATTCGGACAAGAAGGCTTTGACGGCTTTGTGCGA
GACCTTGCTCGCCGAATGTGCCACTTTCCACGAGGAGGCGGGCGAGCCCA
ACAGTGGTCATCGGAAGCTGGAGGCCCTCTCCCTGGAACGTGCCCTCTAT
GCCCTGGAATCCTTTCTCAATGAGGCGCTGCTGCACTTGCTGTTCGTCAG
TCTGATAGATCTGGAAAACGCTTCGGTGGAGAAGCTAAAGGATGCACTGC
AAAGGGATCCTGCGGGAGCTCAGGAGCTAATCTCCGCATTCGACACGAAC
ATGGATCGCATTCAGCAGATTGGGGTTCTGGCCATAGCCTTCTCGCAGGA
CATCAAAACGAAGACGATTGTCAGGAGCTGCCTGGCCTCACTGGAATCCC
TGGATGCGTGCATTGTGCCCGCTCTCCAGCTGCCAGAGTCCACTTCATCC
GCACACCACGCGGAGGTCTTGCAGGAGCATTTTAACCAGGAGCTGCTGAT
CTTTAGGAACGTCATCCACGAAATCATCGATAGCTGCTCCCTGATCAACA
ACTACCTGGACATGCTGGGCGAGAGGATCCACGTACAGGACAAAAGCCAT
CTGAAGCTGATTGTCCAGAGGGGCGGAGTGGTGGTGGATCACTTTCGGCT
GCCCGTCAATTACTCGGGACTCAGTGAAGATGGCAAGCGGGTGCACAAGG
ACCTCATTCTGATCCTGCGCGAGTGCCAGGCCGTGGTCAACCTGGACGTC
CCAGTGGATCCCAAGCGCATCGTGAAGCGCCTTAAGATACTGTACTCCGT
GCTGGCCAAGCTGAGGGACTTGATATGCAGGGATAATCTGGAGCCCGATT
CCTCAGTTGCTTCCGAAGCTCAAGTGCCCTCAAGTGCAACCCGAACTTTT
GTGCGGAGCAGTCGATCCTTTGGCAAACGGCATCGATCCTTTGTAAAACA
AACCGGAAATTGCTCAGTTTTCGGGCCACAGGACTCACTTGCTGAATCCG
GACACAGCGAAAGCGATCTTATTAGTTTCCAAATCACTGAGATTCTTAGG
TTAGATTGAAAGCTTTCTAGACCAT
BS12430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-alpha-RB | 1593 | CG17957-PB | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| Sry-alpha-RA | 1593 | CG17957-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 1490..3083 | 16..1609 | 7970 | 100 | Plus |
| Sry-alpha-RB | 3353 | CG17957-RB | 1543..3136 | 16..1609 | 7970 | 100 | Plus |
| Sry-alpha-RA | 1855 | CG17957-RA | 45..1638 | 16..1609 | 7970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30041261..30042854 | 16..1609 | 7970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:41:18 has no hits.
BS12430.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:55 Download gff for
BS12430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 1..1593 | 17..1609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:48 Download gff for
BS12430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 44..1640 | 9..1609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:37 Download gff for
BS12430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 46..1637 | 17..1608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:30 Download gff for
BS12430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 48..1639 | 17..1608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:18 Download gff for
BS12430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 46..1637 | 17..1608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:18 Download gff for
BS12430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30041262..30042853 | 17..1608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:37 Download gff for
BS12430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25866984..25868575 | 17..1608 | 100 | | Plus |
BS12430.pep Sequence
Translation from 16 to 1608
> BS12430.pep
MEQLLAQLHTCSELIAEGYSSTGNIGWLNEFCATFLDFASDLKARLPEVA
PSGANLDVETIFLCLTQVVTCITHLERTISMEAPHMTRQHFLDRLDWCLR
RLLVSLTQLEGNVTPVKNLEDHSFVELMDLALDHLDDYMEKLAQQRNNSL
HILEESFTEDTYQLASIVNHIVRHALAFANVAIHSDKKALTALCETLLAE
CATFHEEAGEPNSGHRKLEALSLERALYALESFLNEALLHLLFVSLIDLE
NASVEKLKDALQRDPAGAQELISAFDTNMDRIQQIGVLAIAFSQDIKTKT
IVRSCLASLESLDACIVPALQLPESTSSAHHAEVLQEHFNQELLIFRNVI
HEIIDSCSLINNYLDMLGERIHVQDKSHLKLIVQRGGVVVDHFRLPVNYS
GLSEDGKRVHKDLILILRECQAVVNLDVPVDPKRIVKRLKILYSVLAKLR
DLICRDNLEPDSSVASEAQVPSSATRTFVRSSRSFGKRHRSFVKQTGNCS
VFGPQDSLAESGHSESDLISFQITEILRLD*
BS12430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-alpha-PB | 530 | CG17957-PB | 1..530 | 1..530 | 2684 | 100 | Plus |
| Sry-alpha-PA | 530 | CG17957-PA | 1..530 | 1..530 | 2684 | 100 | Plus |
| Spt-PB | 591 | CG8247-PB | 1..457 | 1..449 | 715 | 36.6 | Plus |
