Clone BS12431 Report

Search the DGRC for BS12431

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG31446-RA
Protein status:BS12431.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12431.complete Sequence

731 bp assembled on 2006-11-01

> BS12431.complete
GAAGTTATCAGTCGACATGGTATCAAATAGCACTTATGCTTTGGGTCTCC
TTTGCATTTTGGTTTTTCTACAAGGAAGTACACCGATCCTAGCCCAGAGT
AATGATTATGTGGCCCTATGTAACTTGACCGATAGCATTGCGGTCGATCT
TGATCTGTTCTCTGGAATTTGGTGGGAAGTGGCTCGTCAGCCGTCCGGCA
TTGATTTTTGCACTGAGGTGAATATTACGGTGCTGAATAAAACCGAGGAT
AATGTGCTGATCGATACCACATATGCCGTATCTCCCGATTACCCGTGGGT
GAATCAAACCATGAACGCAACCATCACTGTGGAGAATAACACGGCGGCCG
CGGATGGCTACAACTTCACCTACTGGAACCCACCTGGTTATACCACCTAT
ACAGTGTACAAGGTCCTTTACACTGACTACACCGATGTGGCCTTCCTTTG
TGGCTATACCAACAAGACGGATAACGGCACATCCTTTGGAATTATCCTTG
CTAGGGATCGTACCCCCACCACACAAATTTTGAATAAACTCGAGGGTCTT
GGCTCTAGTATATCTTCAAACTTTTTAAATGGCACCATGTCAGCGATAAC
TCAGGGCGAATCTTGCTATGCACCATCCGGATCCAATCCTTCGACCATTA
TTTCCACAATGTTGATTGCCATGGCTATTATTCTTGGCATTTTTGCTGAC
CATCAAATAAATTAGAAGCTTTCTAGACCAT

BS12431.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-RA 699 CG31446-PA 1..699 17..715 3495 100 Plus
CG31446-RB 714 CG31446-PB 1..714 17..715 3310 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-RA 869 CG31446-RA 45..744 17..716 3500 100 Plus
CG31446-RB 884 CG31446-RB 45..759 17..716 3315 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15693328..15693783 157..612 2280 100 Plus
3R 32079331 3R 15693130..15693270 17..157 705 100 Plus
3R 32079331 3R 15693966..15694069 613..716 520 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:19:20 has no hits.

BS12431.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:40 Download gff for BS12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:59 Download gff for BS12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 37..749 8..724 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:21 Download gff for BS12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 45..743 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:41 Download gff for BS12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 37..749 8..724 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:56 Download gff for BS12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 45..743 17..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:56 Download gff for BS12431.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15693130..15693270 17..157 100 -> Plus
3R 15693329..15693783 158..612 100 -> Plus
3R 15693966..15694068 613..715 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:21 Download gff for BS12431.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11518852..11518992 17..157 100 -> Plus
arm_3R 11519051..11519505 158..612 100 -> Plus
arm_3R 11519688..11519790 613..715 100   Plus

BS12431.pep Sequence

Translation from 16 to 714

> BS12431.pep
MVSNSTYALGLLCILVFLQGSTPILAQSNDYVALCNLTDSIAVDLDLFSG
IWWEVARQPSGIDFCTEVNITVLNKTEDNVLIDTTYAVSPDYPWVNQTMN
ATITVENNTAAADGYNFTYWNPPGYTTYTVYKVLYTDYTDVAFLCGYTNK
TDNGTSFGIILARDRTPTTQILNKLEGLGSSISSNFLNGTMSAITQGESC
YAPSGSNPSTIISTMLIAMAIILGIFADHQIN*

BS12431.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-PA 232 CG31446-PA 1..232 1..232 1216 100 Plus
CG31446-PB 237 CG31446-PB 1..237 1..232 1200 97.9 Plus
CG5399-PB 218 CG5399-PB 5..215 8..223 161 30.9 Plus
CG5399-PA 218 CG5399-PA 5..215 8..223 161 30.9 Plus