BS12434.complete Sequence
1046 bp assembled on 2006-11-01
GenBank Submission: FJ637178
> BS12434.complete
GAAGTTATCAGTCGACATGTACAAGAATCTGGAGGAGCACAACCGGCTGG
TTAACAAATACCTAAAGATATTCTTCGTCGTGTCGCTCTACTGGTGCACC
TCGATATTGACGGTATTCGTAAATAAGCACCTGCTGAGCAGCGATACAGT
AAACCTGGGAGCTCCGCTCTTTATGTCCTGGTTCCAATGCGTGGTTTCCA
CAGTGATATGTTTTGTGGCAAGTCGGCTGAGCAGGAAGTACCCCTCGGTA
TTTACGTTTCCCGAGGGAAATCCACTGGACATCGACACCTTCCGCAAGAT
CCTGCCTCTATCTGTGCTCTATACCCTGATGATTGGGGCCAACAACCTGT
CGCTGTCCTACGTCACAGTGGCCTTCTACTACATCGGTCGCTCCCTAACA
ACCGTGTTTAGTGTGGTCCTCACTTACGTGATTCTACGCCAACGAACCAG
CTTCAAGTGCCTGCTGTGTTGTGGCGCTATTGTCGTTGGATTCTGGCTGG
GTGTGGACCAAGAAAGCCTGACGGAGGTCTTCTCCTGGCGGGGAACCATC
TTTGGAGTGCTTAGTTCGCTTGCTTTGGCCATGTTTTCTATTCAGACGAA
GAAATCATTGGGTTATGTCAACCAGGAGGTATGGCTGCTTAGCTACTACA
ATAATCTCTACTCCACGTTGCTCTTCCTGCCCCTGATCATCATCAATGGC
GAGCTGGAGAGCATTATCACGTATCCGCACCTGTGGGCTTCTTGGTTCTG
GGCCGCGATGACGCTTAGTGGCCTTTGTGGCTTTGCCATTGGATTTGTCA
CTGCGCTGGAAATCAAGGTCACATCCGCCCTGACGCATAATATCTCGGGA
ACGGCCAAGGCCTGCGCTCAAACGGTGATCGCCACTCAGTACTACCATGA
CGTTCGATCGGCTCTCTGGTGGACCTCCAATGTGGTGGTCCTGGTGGCCA
GCGCCGCCTACACCCGTGTCAAGCAGCTGGAGATGATGCGCCAGCACCAA
CAACGCAGCACCGCCACCCAGAAGGCCTGAAAGCTTTCTAGACCAT
BS12434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1014 | CG9620-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1225 | CG9620-RA | 95..1113 | 13..1031 | 5080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8303063..8303789 | 819..93 | 3635 | 100 | Minus |
| 3R | 32079331 | 3R | 8302798..8303013 | 1031..816 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 8303846..8303929 | 96..13 | 405 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:57:22 has no hits.
BS12434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:42 Download gff for
BS12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:21 Download gff for
BS12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 83..1109 | 13..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:22 Download gff for
BS12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 99..1111 | 17..1029 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:42 Download gff for
BS12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 83..1109 | 13..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:30 Download gff for
BS12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 99..1111 | 17..1029 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:30 Download gff for
BS12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8302800..8303011 | 818..1029 | 100 | <- | Minus |
| 3R | 8303065..8303788 | 94..817 | 100 | <- | Minus |
| 3R | 8303849..8303925 | 17..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:22 Download gff for
BS12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4128522..4128733 | 818..1029 | 100 | <- | Minus |
| arm_3R | 4128787..4129510 | 94..817 | 100 | <- | Minus |
| arm_3R | 4129571..4129647 | 17..93 | 100 | | Minus |
BS12434.pep Sequence
Translation from 16 to 1029
> BS12434.pep
MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAP
LFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSV
LYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLL
CCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGY
VNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTL
SGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSAL
WWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKA*
BS12434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-PA | 337 | CG9620-PA | 1..337 | 1..337 | 1744 | 100 | Plus |
| frc-PB | 373 | CG3874-PB | 70..320 | 25..288 | 172 | 26.3 | Plus |
| frc-PA | 373 | CG3874-PA | 70..320 | 25..288 | 172 | 26.3 | Plus |
