Clone BS12438 Report

Search the DGRC for BS12438

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG7071-RA
Protein status:BS12438.pep: full length peptide match
Sequenced Size:941

Clone Sequence Records

BS12438.complete Sequence

941 bp assembled on 2009-02-12

> BS12438.complete
GAAGTTATCAGTCGACATGCTGAAGTCAACGATTGTTGATCCGCGGGTGC
GCCTTGTGCCGTCAAAGAAGCTGCTTGACTTTCTGGACGCCCAAAAGAAG
CACTTAAAGGAGTTGCCCGAAAATGTGGCCAAGATTATGAAGCAAAGAGG
CCACACACTGCCCACCTCTATTAGGATTATCAAGGATGCGGGCTTGGAGT
ACAAACGACCAAAACTCAATTACGAGCTGTTGACAAAACTAACTGAAAAC
CTAGCCGACAAACCAGAAGAACCTGCTAAGGATAAATCGGAACCAGATTC
AGGGGTCAAGGATAGTGATGACGCAAAGTCAACAAGGGAGGTTAAACATT
TCCTATACTTAACCGACCTGCACTGGCTCTCAAAAACACTGGCTGAACTG
CGTCGTCAGGATCACTGCCAAGTCTTTCTGCATCAGCTAATTGAGTCCTG
TGATCTGCTCCTGCCCGAAAACGAAATGAAGCCGCGCAATCCTGAGCTAG
AAGCGCGCTGCCAACGTCTTCGCGCAGAGCAACAAAATCGGGATTACCTC
AAAATGACCAAGAATGTGGATGCCGGCTTAAAACACTATCCAGAGGACAC
TATCAGCTATCAGATTAAGAGCCTTAACAAGCAAATCATTGCCGTGGTGC
AGTTCATCTTCTCCGTGGCCGCTGGCTTTACGTTCGGCTTTTTCGGCGTC
AATTTGATGGTGGGCCCGCTGCCTTTCGGCTTTCGCATCTTGCTGGGCGT
GATTGTAGCGCTCATCATAGCCCTGGCTGAGATGTACTTCCTGGCCAAGA
AGCTGCACGAGTACGATGAGGTCTTGGACGCGCCCAAACGTAAGCCGCAG
CCATCGACGCCGGCTAAGCGCACCCCGCCCGCCGAGGGAAGTCAAGTCCA
GACATTGAAACCCCATGTTGACTAGAAGCTTTCTAGACCAT

BS12438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-RC 909 CG7071-PC 1..909 17..925 4545 100 Plus
CG7071-RB 909 CG7071-PB 1..909 17..925 4545 100 Plus
CG7071-RA 909 CG7071-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-RC 1766 CG7071-RC 785..1694 17..926 4550 100 Plus
CG7071-RB 1551 CG7071-RB 570..1479 17..926 4550 100 Plus
CG7071-RA 1489 CG7071-RA 508..1417 17..926 4550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22363530..22364132 17..619 3000 99.8 Plus
3R 32079331 3R 22364197..22364508 615..926 1560 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:49:28 has no hits.

BS12438.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:31 Download gff for BS12438.complete
Subject Subject Range Query Range Percent Splice Strand
CG34131-RA 508..1416 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:45 Download gff for BS12438.complete
Subject Subject Range Query Range Percent Splice Strand
muted-RA 508..1416 17..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:28 Download gff for BS12438.complete
Subject Subject Range Query Range Percent Splice Strand
CG7071-RA 508..1416 17..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:28 Download gff for BS12438.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22363530..22364127 17..614 100 -> Plus
3R 22364197..22364507 615..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:45 Download gff for BS12438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18189252..18189849 17..614 100 -> Plus
arm_3R 18189919..18190229 615..925 100   Plus

BS12438.pep Sequence

Translation from 16 to 924

> BS12438.pep
MLKSTIVDPRVRLVPSKKLLDFLDAQKKHLKELPENVAKIMKQRGHTLPT
SIRIIKDAGLEYKRPKLNYELLTKLTENLADKPEEPAKDKSEPDSGVKDS
DDAKSTREVKHFLYLTDLHWLSKTLAELRRQDHCQVFLHQLIESCDLLLP
ENEMKPRNPELEARCQRLRAEQQNRDYLKMTKNVDAGLKHYPEDTISYQI
KSLNKQIIAVVQFIFSVAAGFTFGFFGVNLMVGPLPFGFRILLGVIVALI
IALAEMYFLAKKLHEYDEVLDAPKRKPQPSTPAKRTPPAEGSQVQTLKPH
VD*

BS12438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-PC 302 CG7071-PC 1..302 1..302 1557 100 Plus
CG7071-PB 302 CG7071-PB 1..302 1..302 1557 100 Plus
CG7071-PA 302 CG7071-PA 1..302 1..302 1557 100 Plus