Clone BS12441 Report

Search the DGRC for BS12441

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG17780-RA
Protein status:BS12441.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12441.complete Sequence

716 bp assembled on 2007-10-17

GenBank Submission: FJ637180

> BS12441.complete
GAAGTTATCAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGC
TGCACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACT
CAACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACA
TTTCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCG
ACTTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAG
CGTTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGG
CAAGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCT
TCCGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAAT
GCCGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGAC
TGCTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGT
TCTGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATG
CTTTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCG
GCATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCC
ATTGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTTAG
AAGCTTTCTAGACCAT

BS12441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-RA 684 CG17780-PA 1..684 17..700 3420 100 Plus
CG17780-RB 1038 CG17780-PB 1..563 17..579 2815 100 Plus
CG17780-RB 1038 CG17780-PB 918..1038 580..700 605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-RA 1279 CG17780-RA 167..852 15..700 3430 100 Plus
CG17780-RB 1633 CG17780-RB 167..731 15..579 2825 100 Plus
CG17780-RB 1633 CG17780-RB 1086..1206 580..700 605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24384608..24384886 293..15 1365 99.3 Minus
3R 32079331 3R 24384362..24384538 462..286 885 100 Minus
3R 32079331 3R 24383347..24383468 700..579 610 100 Minus
3R 32079331 3R 24384147..24384264 579..462 590 100 Minus
Blast to na_te.dros performed 2014-11-27 15:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2388 71..34 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6856..6893 71..34 118 78.9 Minus

BS12441.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:58 Download gff for BS12441.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:51 Download gff for BS12441.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 152..852 1..705 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:47 Download gff for BS12441.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 169..852 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:01 Download gff for BS12441.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 165..848 17..700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:01 Download gff for BS12441.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 169..852 17..700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:01 Download gff for BS12441.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24383347..24383467 580..700 100 <- Minus
3R 24384147..24384263 463..579 100 <- Minus
3R 24384362..24384537 287..462 100 <- Minus
3R 24384615..24384884 17..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:47 Download gff for BS12441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20209069..20209189 580..700 100 <- Minus
arm_3R 20209869..20209985 463..579 100 <- Minus
arm_3R 20210084..20210259 287..462 100 <- Minus
arm_3R 20210337..20210606 17..286 100   Minus

BS12441.pep Sequence

Translation from 16 to 699

> BS12441.pep
MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM
VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW
TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH
GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL
REENCEQIMHSHCPLSFDSISPYTDDV*

BS12441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-PA 227 CG17780-PA 1..227 1..227 1213 100 Plus
CG17780-PB 345 CG17780-PB 1..188 1..188 990 100 Plus
CG17780-PB 345 CG17780-PB 186..345 73..227 405 50.6 Plus