BS12441.complete Sequence
716 bp assembled on 2007-10-17
GenBank Submission: FJ637180
> BS12441.complete
GAAGTTATCAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGC
TGCACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACT
CAACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACA
TTTCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCG
ACTTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAG
CGTTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGG
CAAGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCT
TCCGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAAT
GCCGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGAC
TGCTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGT
TCTGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATG
CTTTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCG
GCATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCC
ATTGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTTAG
AAGCTTTCTAGACCAT
BS12441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-RA | 684 | CG17780-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
CG17780-RB | 1038 | CG17780-PB | 1..563 | 17..579 | 2815 | 100 | Plus |
CG17780-RB | 1038 | CG17780-PB | 918..1038 | 580..700 | 605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-RA | 1279 | CG17780-RA | 167..852 | 15..700 | 3430 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 167..731 | 15..579 | 2825 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 1086..1206 | 580..700 | 605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24384608..24384886 | 293..15 | 1365 | 99.3 | Minus |
3R | 32079331 | 3R | 24384362..24384538 | 462..286 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24383347..24383468 | 700..579 | 610 | 100 | Minus |
3R | 32079331 | 3R | 24384147..24384264 | 579..462 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2388 | 71..34 | 118 | 78.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6893 | 71..34 | 118 | 78.9 | Minus |
BS12441.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:58 Download gff for
BS12441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:51 Download gff for
BS12441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 152..852 | 1..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:47 Download gff for
BS12441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 169..852 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:01 Download gff for
BS12441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 165..848 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:01 Download gff for
BS12441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 169..852 | 17..700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:01 Download gff for
BS12441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24383347..24383467 | 580..700 | 100 | <- | Minus |
3R | 24384147..24384263 | 463..579 | 100 | <- | Minus |
3R | 24384362..24384537 | 287..462 | 100 | <- | Minus |
3R | 24384615..24384884 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:47 Download gff for
BS12441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20209069..20209189 | 580..700 | 100 | <- | Minus |
arm_3R | 20209869..20209985 | 463..579 | 100 | <- | Minus |
arm_3R | 20210084..20210259 | 287..462 | 100 | <- | Minus |
arm_3R | 20210337..20210606 | 17..286 | 100 | | Minus |
BS12441.pep Sequence
Translation from 16 to 699
> BS12441.pep
MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM
VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW
TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH
GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL
REENCEQIMHSHCPLSFDSISPYTDDV*
BS12441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-PA | 227 | CG17780-PA | 1..227 | 1..227 | 1213 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 1..188 | 1..188 | 990 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 186..345 | 73..227 | 405 | 50.6 | Plus |