BS12444.complete Sequence
1334 bp assembled on 2006-11-01
GenBank Submission: FJ637182
> BS12444.complete
GAAGTTATCAGTCGACATGGGGCTGAACGGAAGACGACGATTGTTGGGCT
GCGGCCTGGGATTCTTCTGCCTGATCTTCTGCTCTTACGCCGCGCCAGCA
TCATTTGAGGATGTGAGCATCTCAAGGGGTCCGAAATCCTCGATTACCAT
CAAGGAACAAAGTTCGTTGCAATTGCCCTGTGACTACCAACTGCCGGATG
GGTATCTTCAGAAGAGCAGCGTCATCCTGCGCTGGCGAAAGGATAGCAAA
ACGTTGCGTCAAGTAGAGCTGGGCAGGATGGACAGCACAACGAGCGAACC
ACAGCTGGAAACCATGCTGCGGGAGGATTCCCGTGTGGCGCTGAGCAAGG
ACAGTGGCGCCCTGCAATTCACAAGCGTGCTGGCCAGCGATGCCGGTCAG
TATCAGTGCCAGTTGGTCATCGACGACTCCGTGGCTGCCAGCTCCAGCAG
TGGGGTGCTCCTGGTTATTGAGCAACTAAAGTTCGTGCCACAGCCAACCT
CCAAAAACTTGGAGTTGGGAACTCTTAGTAAGGTCCACTGCAAGGCGCAG
GGAACACCTGCTCCACAAGTCAAATGGATGAGGGAAACCCAGCTACCTCT
CCCTGTTAACGTAACCGATCAGAATGGCACGCTGATTTTCAACCAGGTCA
GCAACGAGCAACGGGGTCAGTACACCTGCATCGCCTCCAATAGCCAGGGT
CAAATCACGGCCACCGTGTCCATCAATGTGGTGGTGGCCCCGAAGTTCAG
TGTTCCGCCGGAGGGACCCATCGAGGTCGCAGAAGCCGGAACTGCCGTGA
TCCACTGCCAGGCAATCGGAGAGCCAAAACCCACCATTCAATGGGACAAG
GATCTCACCTACTTGAACGAGAATAACACGGATCCGGAACGCTTTTCCCT
AATGGAGAACGGAACTCTGGAGATACGCAATGTTCGGCCAGAGGATGAGG
GTCGCTACGGCTGCACCATTGGCAGCAGTGCGGGCTTGAAGCGAGAGGAT
GTTCTGCTGGTGTTGAAGTCAAGTAAATCCGCGTCCAATTCAATAGTGAC
CCGGATTATCATTGTGATCATTTGCCTGGCCTTCCTGTACTTTGTGCTGG
TGCTTGGCCTAAAGGTGTGGTACCGCTATCGTCGTCACCTGGGCAAGGTG
CAGCTGGAAGATGGCCATGTCAATGGGCCCACCGATGGTCAGGAGCACGA
CCATCACGAAAACGAGCCCTGCCTGACGGAGGCCAACTCCAGCAAGAATC
TGAAGAGCAAGCTGAGGGAGAGCACGATACTGGAGCAGGAGTCGCAGGTG
GCCGACGATATTGTGTGAAAGCTTTCTAGACCAT
BS12444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk2-RA | 1302 | CG8964-PA | 1..1302 | 17..1318 | 6495 | 99.9 | Plus |
| otk-RB | 3060 | CG8967-PB | 1333..1684 | 671..1022 | 380 | 73.9 | Plus |
| otk-RA | 3102 | CG8967-PA | 1333..1684 | 671..1022 | 380 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk2-RA | 1968 | CG8964-RA | 380..1686 | 12..1318 | 6505 | 99.8 | Plus |
| otk-RB | 4769 | CG8967-RB | 2250..2601 | 671..1022 | 380 | 73.9 | Plus |
| otk-RA | 4671 | CG8967-RA | 2250..2601 | 671..1022 | 380 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12023428..12024163 | 1318..583 | 3680 | 100 | Minus |
| 2R | 25286936 | 2R | 12024250..12024745 | 584..89 | 2465 | 99.8 | Minus |
| 2R | 25286936 | 2R | 12003773..12004124 | 1022..671 | 380 | 73.9 | Minus |
| 2R | 25286936 | 2R | 12024816..12024893 | 89..12 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:00:52 has no hits.
BS12444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:44 Download gff for
BS12444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8964-RA | 1..1302 | 17..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:24 Download gff for
BS12444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8964-RA | 372..1684 | 5..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:51 Download gff for
BS12444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8964-RA | 385..1685 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:44 Download gff for
BS12444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8964-RA | 372..1684 | 5..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:33 Download gff for
BS12444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk2-RA | 385..1685 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:33 Download gff for
BS12444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12023429..12024162 | 584..1317 | 100 | <- | Minus |
| 2R | 12024251..12024744 | 90..583 | 99 | <- | Minus |
| 2R | 12024816..12024888 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:51 Download gff for
BS12444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7910934..7911667 | 584..1317 | 100 | <- | Minus |
| arm_2R | 7911756..7912249 | 90..583 | 99 | <- | Minus |
| arm_2R | 7912321..7912393 | 17..89 | 100 | | Minus |
BS12444.pep Sequence
Translation from 16 to 1317
> BS12444.pep
MGLNGRRRLLGCGLGFFCLIFCSYAAPASFEDVSISRGPKSSITIKEQSS
LQLPCDYQLPDGYLQKSSVILRWRKDSKTLRQVELGRMDSTTSEPQLETM
LREDSRVALSKDSGALQFTSVLASDAGQYQCQLVIDDSVAASSSSGVLLV
IEQLKFVPQPTSKNLELGTLSKVHCKAQGTPAPQVKWMRETQLPLPVNVT
DQNGTLIFNQVSNEQRGQYTCIASNSQGQITATVSINVVVAPKFSVPPEG
PIEVAEAGTAVIHCQAIGEPKPTIQWDKDLTYLNENNTDPERFSLMENGT
LEIRNVRPEDEGRYGCTIGSSAGLKREDVLLVLKSSKSASNSIVTRIIIV
IICLAFLYFVLVLGLKVWYRYRRHLGKVQLEDGHVNGPTDGQEHDHHENE
PCLTEANSSKNLKSKLRESTILEQESQVADDIV*
BS12444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk2-PA | 433 | CG8964-PA | 1..433 | 1..433 | 2224 | 100 | Plus |
| otk-PB | 1019 | CG8967-PB | 246..665 | 25..431 | 1064 | 53.6 | Plus |
| otk-PA | 1033 | CG8967-PA | 246..665 | 25..431 | 1064 | 53.6 | Plus |
| tutl-PH | 1533 | CG15427-PH | 373..657 | 37..337 | 246 | 26.8 | Plus |
| tutl-PE | 902 | CG15427-PE | 350..632 | 39..337 | 244 | 26.7 | Plus |
| tutl-PH | 1533 | CG15427-PH | 209..451 | 113..323 | 188 | 22.9 | Plus |
