Clone BS12449 Report

Search the DGRC for BS12449

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptMuc18B-RA
Protein status:BS12449.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12449.complete Sequence

959 bp assembled on 2006-11-01

GenBank Submission: FJ637185

> BS12449.complete
GAAGTTATCAGTCGACATGTTTAAGCTAACGATGCTGATGGGCCTGGCCC
TCATCCTGGCCCCATCAACGATCCAGGCCAAGTCCCTGTGCCGCAGCAGC
GGCTACTTCGCCCTAGTGGATAACACACCCGACTTCTATGCCTGCCAGTC
AACCGCCTACGGTGGCTACTCTCTGCGCTTCCTGCGCTGCCCCGCTGGTC
TGGTCTTCAGCTCCTCGATGGCCCAGTGCGTTCAGTCCATTGCCGCTTTC
GAGGCTCGTGATGATAGCAACATCGAGAACCCTACCATTCCGCCGAGCAA
CCTGGATGAGAGCACCACTGAGAAACCAGCCACTGAGGCACCTGGCACAA
CCGAGAAAGTAACCACTGCGGCACCTGGCACCACTGAGAAAGTAACCACT
GAGGCACCTGGCACCACTGAGAAAATAACCACTGAGGCACCTGGAACCAC
CGAGAAAATAACCACTGAGGCACCTGGAACCACCGAGAAAATAACCACTG
AGGCACCTGGAACCACCGAGAAAATAACCACTGAGGCTCCTGGAACCACT
GAAAAGCCCGCCACCGATGCTCCCGGCACCACCGAAAAACCAGCCACGGA
TGCACCTGGAACCACTGAGAAATCAGAAACTACTGATGCTCCCGGCACCA
CGGATAAATCAGATACTGATGCTCCCATTACCGACGAGCCGTCAACCGCT
GAGACCAGTACCGATGAGCCCAACACCGAGACCACTGAAAGCGGCGAAGA
GACCACCATCGAGGACAATGTGTGCGCCACCACCGGACTATTCCCGACGG
GCAGCTGCACGCACTTCATCGTCTGCAGCTACGCCGAAGGGGACGAGCTG
AAGGCCTACACGAAGAAGTGTCCTGGCGAGATGCAGTTCGATCCCTTCAA
CAGCGTTTGCTCAGCGTCTTACGACTGCACTGCAGGAAACTAAAAGCTTT
CTAGACCAT

BS12449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Muc18B-RB 927 CG7876-PB 1..927 17..943 4635 100 Plus
Muc18B-RA 927 CG7876-PA 1..927 17..943 4635 100 Plus
Muc18B-RB 927 CG7876-PB 296..615 345..667 905 86.1 Plus
Muc18B-RB 927 CG7876-PB 329..651 312..631 905 86.1 Plus
Muc18B-RA 927 CG7876-PA 296..615 345..667 905 86.1 Plus
Muc18B-RA 927 CG7876-PA 329..651 312..631 905 86.1 Plus
Muc18B-RB 927 CG7876-PB 296..587 378..672 735 84.1 Plus
Muc18B-RB 927 CG7876-PB 362..656 312..603 735 84.1 Plus
Muc18B-RA 927 CG7876-PA 296..587 378..672 735 84.1 Plus
Muc18B-RA 927 CG7876-PA 362..656 312..603 735 84.1 Plus
Muc18B-RB 927 CG7876-PB 296..507 411..622 580 84.9 Plus
Muc18B-RB 927 CG7876-PB 395..606 312..523 580 84.9 Plus
Muc18B-RA 927 CG7876-PA 296..507 411..622 580 84.9 Plus
Muc18B-RA 927 CG7876-PA 395..606 312..523 580 84.9 Plus
Muc18B-RB 927 CG7876-PB 298..474 446..622 420 82.5 Plus
Muc18B-RB 927 CG7876-PB 430..606 314..490 420 82.5 Plus
Muc18B-RA 927 CG7876-PA 298..474 446..622 420 82.5 Plus
Muc18B-RA 927 CG7876-PA 430..606 314..490 420 82.5 Plus
Muc18B-RB 927 CG7876-PB 463..606 314..457 300 80.6 Plus
Muc18B-RB 927 CG7876-PB 298..441 479..622 300 80.6 Plus
Muc18B-RA 927 CG7876-PA 298..441 479..622 300 80.6 Plus
Muc18B-RA 927 CG7876-PA 463..606 314..457 300 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Muc18B-RB 1146 CG7876-RB 45..975 13..943 4640 99.9 Plus
Muc18B-RA 1068 CG7876-RA 45..975 13..943 4640 99.9 Plus
Muc18B-RB 1146 CG7876-RB 344..663 345..667 905 86.1 Plus
Muc18B-RB 1146 CG7876-RB 377..699 312..631 905 86.1 Plus
Muc18B-RA 1068 CG7876-RA 344..663 345..667 905 86.1 Plus
Muc18B-RA 1068 CG7876-RA 377..699 312..631 905 86.1 Plus
Muc18B-RB 1146 CG7876-RB 344..635 378..672 735 84.1 Plus
Muc18B-RB 1146 CG7876-RB 410..704 312..603 735 84.1 Plus
Muc18B-RA 1068 CG7876-RA 344..635 378..672 735 84.1 Plus
Muc18B-RA 1068 CG7876-RA 410..704 312..603 735 84.1 Plus
Muc18B-RB 1146 CG7876-RB 344..555 411..622 580 84.9 Plus
Muc18B-RB 1146 CG7876-RB 443..654 312..523 580 84.9 Plus
Muc18B-RA 1068 CG7876-RA 344..555 411..622 580 84.9 Plus
Muc18B-RA 1068 CG7876-RA 443..654 312..523 580 84.9 Plus
Muc18B-RB 1146 CG7876-RB 346..522 446..622 420 82.5 Plus
Muc18B-RB 1146 CG7876-RB 478..654 314..490 420 82.5 Plus
Muc18B-RA 1068 CG7876-RA 346..522 446..622 420 82.5 Plus
Muc18B-RA 1068 CG7876-RA 478..654 314..490 420 82.5 Plus
Muc18B-RB 1146 CG7876-RB 346..489 479..622 300 80.6 Plus
Muc18B-RB 1146 CG7876-RB 511..654 314..457 300 80.6 Plus
Muc18B-RA 1068 CG7876-RA 346..489 479..622 300 80.6 Plus
Muc18B-RA 1068 CG7876-RA 511..654 314..457 300 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19215559..19216489 13..943 4640 99.9 Plus
X 23542271 X 19215858..19216177 345..667 905 86.1 Plus
X 23542271 X 19215891..19216213 312..631 905 86.1 Plus
X 23542271 X 19215858..19216149 378..672 735 84.1 Plus
X 23542271 X 19215924..19216218 312..603 735 84.1 Plus
X 23542271 X 19215858..19216069 411..622 580 84.9 Plus
X 23542271 X 19215957..19216168 312..523 580 84.9 Plus
X 23542271 X 19215860..19216036 446..622 420 82.5 Plus
X 23542271 X 19215992..19216168 314..490 420 82.5 Plus
X 23542271 X 19215860..19216003 479..622 300 80.6 Plus
X 23542271 X 19216025..19216168 314..457 300 80.6 Plus
Blast to na_te.dros performed on 2014-11-27 23:33:34 has no hits.

BS12449.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:28 Download gff for BS12449.complete
Subject Subject Range Query Range Percent Splice Strand
CG7876-RA 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:06 Download gff for BS12449.complete
Subject Subject Range Query Range Percent Splice Strand
CG7876-RA 39..976 9..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:49 Download gff for BS12449.complete
Subject Subject Range Query Range Percent Splice Strand
Muc18B-RA 55..973 23..941 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:29 Download gff for BS12449.complete
Subject Subject Range Query Range Percent Splice Strand
CG7876-RA 39..976 9..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:14 Download gff for BS12449.complete
Subject Subject Range Query Range Percent Splice Strand
Muc18B-RA 55..973 23..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:14 Download gff for BS12449.complete
Subject Subject Range Query Range Percent Splice Strand
X 19215569..19216487 23..941 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:49 Download gff for BS12449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19109602..19110520 23..941 100   Plus

BS12449.pep Sequence

Translation from 16 to 942

> BS12449.pep
MFKLTMLMGLALILAPSTIQAKSLCRSSGYFALVDNTPDFYACQSTAYGG
YSLRFLRCPAGLVFSSSMAQCVQSIAAFEARDDSNIENPTIPPSNLDEST
TEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKITTEAPGTTEKITT
EAPGTTEKITTEAPGTTEKITTEAPGTTEKPATDAPGTTEKPATDAPGTT
EKSETTDAPGTTDKSDTDAPITDEPSTAETSTDEPNTETTESGEETTIED
NVCATTGLFPTGSCTHFIVCSYAEGDELKAYTKKCPGEMQFDPFNSVCSA
SYDCTAGN*

BS12449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Muc18B-PB 308 CG7876-PB 1..308 1..308 1615 100 Plus
Muc18B-PA 308 CG7876-PA 1..308 1..308 1615 100 Plus
Sgs3-PA 307 CG11720-PA 84..260 89..262 233 38.3 Plus
Sgs3-PA 307 CG11720-PA 43..249 59..261 232 33 Plus
Sgs3-PA 307 CG11720-PA 98..265 89..257 228 38.5 Plus
Sgs3-PA 307 CG11720-PA 40..229 90..261 226 36.1 Plus
Mur2B-PB 1144 CG14796-PB 557..736 84..258 221 34.4 Plus
CG43332-PA 628 CG43332-PA 324..488 90..247 220 40.8 Plus
CG43332-PA 628 CG43332-PA 353..514 103..261 198 40.8 Plus
CG43332-PA 628 CG43332-PA 364..532 85..247 196 38.6 Plus
CG43332-PA 628 CG43332-PA 394..547 90..240 179 41.2 Plus
CG43332-PA 628 CG43332-PA 249..452 90..256 169 34.8 Plus
Sgs3-PA 307 CG11720-PA 27..160 121..256 157 36 Plus