Clone BS12450 Report

Search the DGRC for BS12450

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG5292-RA
Protein status:BS12450.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12450.complete Sequence

515 bp assembled on 2006-11-01

GenBank Submission: FJ638845

> BS12450.complete
GAAGTTATCAGTCGACATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGG
CGAGGCGGGCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTT
CATGGGGACAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCG
GAACGCCACTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCA
GCTGCCGCGAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACC
GTGGTGGTCACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACAC
TCTGGGCGTCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAG
GAAAGACGGTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATC
ACGGGCGGTGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTA
CAAGGGCGACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGTAGA
AGCTTTCTAGACCAT

BS12450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RB 483 CG5292-PB 1..483 17..499 2415 100 Plus
CG5292-RA 483 CG5292-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RB 1855 CG5292-RB 114..596 17..499 2415 100 Plus
CG5292-RA 1191 CG5292-RA 114..596 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17151974..17152456 17..499 2415 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:43:56 has no hits.

BS12450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:18 Download gff for BS12450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:14 Download gff for BS12450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 109..591 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:34 Download gff for BS12450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..581 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:18 Download gff for BS12450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 109..591 17..499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:04 Download gff for BS12450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..581 17..484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:04 Download gff for BS12450.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17151974..17152441 17..484 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:34 Download gff for BS12450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12977696..12978163 17..484 100   Plus

BS12450.pep Sequence

Translation from 16 to 498

> BS12450.pep
MAAFMEEALVEARRARDAGEVPVGCVFVHGDKVVARGGNEVNVHRNATRH
AEFICIDAILASCRERRLPARQLFSEITVVVTVEPCIMCSAALHTLGVKE
IIYGCENDRFGGKTVVDVAAVVGHRIEITGGVRADEAMALLKDFYKGDNP
AAPPQAKKKK*

BS12450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-PB 160 CG5292-PB 1..160 1..160 825 100 Plus
CG5292-PA 160 CG5292-PA 1..160 1..160 825 100 Plus