BS12451.complete Sequence
1523 bp assembled on 2006-11-01
GenBank Submission: FJ637186
> BS12451.complete
GAAGTTATCAGTCGACATGGCTGTGCTGGGCGCCCAATTGGTCATCACCT
TGGTGATGGTCAGCGTTATCCAGAAGTTGAGTCCACACTACTCCTTCGCC
AAGTGGATTCTGTGCCGCACCGGACTCTATCGATACCTGCATCCCACGGA
CGATGAGCTGCGGTCCCGCGGCGGTGTGCCCAAGGAGAAGCCACCAAAAG
GTGGTCGAAATAAGCAGGCAAATGGTTCAGGAGGAGCGGCGGGTGCACAA
TTCCACATACCGCGCAGCATTGAGGTGGAGCTGTTGACGTCACCGGTGTT
GGAACGGGATGTTGTCCACCTGCGCTACTTCACCGAATATCAATGGCTGC
TGGACTTCAGTGTCTACACGGGGATCGTCTACGTGGTCTCCGAGCTGTTC
CACTTCTACTACCCGCTGCGCCACGAGGTCAACTTGAGCATGGTGTGGTG
CCTGCTGGTCATCTTCTTTGCCCTGAAGCTGCTGTCCTCGCTTACGGTGC
TCTACTTCCAGAGCGAGGAGTCCATCGGCGAGAGGTCGATGGTGATTGTT
GCCTGTTTGGTTTACCTGCTGGTGGCCATGGTCGTGCTGATCGTTGACGA
GCGCATTCTGGAGACGGGACTGGAGGATGCCTATGCGAGCTTTAATGCCA
GCGCTTCCAAGTTCCTCACCGAGCAGGGCCTGCCATCATCTGGTCCCGCC
TCCAAGATCGTGGTCAAGTTCTTTTTGGCCATGGGTTGCGGCCTGCTCGG
CTCATTGTTCACCTTCCCCGGCTTGCGGATGGCCAAGATGCACTGGGATT
CGTTGAAGTACTGTCGCGGCAACCGGTTGCTGCAAGTGCTCCTGAATCTC
AGCTTTGTGCTGCCCTTTATTCTGGTCATCCTGTGGATTCGGCCCATTAG
CCGCGATTACCTGACGGTGCGCGTCTTCCAAGGAATGCAACAGCCACTAC
TGAAGCCACACGTTTTTGAGACACTTCGCCTGCTGCTAGTGATCTTTGTG
GTGGTGGTTCGTTTCGCCTTGATGCCCATATATCTGCAATCGTACCTGAA
TCTGGCCCACGACAAGATCATGGATCTGCGCAAGGAGGCCGGTCGGATCA
CCAACGTAGAGTTCAAGCAGAAGATCTCGTCTATTTTCTACTATCTATGT
GTTGTGACGCTGCAATTTGCTGCCCCACTGATCCTATGCCTTTATCTCAC
ACTTATGTACAAAAGTCTGGGCGGCTTTAGCTGGTCGGGTATTTTCCGCG
AGAGCGTTGTCCTGCAGCACGAGTGTGCGGCTAGCGAAACGGAAGGAGCT
GGTGTTGCCGTTTCCCAAGGAGATGGTGACTTTAATATTATTGAGTCGGC
GCAATCGCTGCAGGCTTCGTTTAGCAGCCTGAAAAACGTTTTCTCCACGG
AGGTGTACAAGGGTTTCCTGGGCTTTGCCACCTGGTGGAGCTACTTCACC
CTATTCGCCACTTCATCGCTGGGCATTGTCTACCAATCATATTTCAACAA
GACCTAGAAGCTTTCTAGACCAT
BS12451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7638-RA | 1491 | CG7638-PA | 1..1491 | 17..1507 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7638-RA | 1891 | CG7638-RA | 148..1638 | 17..1507 | 7455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11110029..11110404 | 19..394 | 1880 | 100 | Plus |
| 3L | 28110227 | 3L | 11110503..11110800 | 393..690 | 1490 | 100 | Plus |
| 3L | 28110227 | 3L | 11111423..11111690 | 1122..1389 | 1340 | 100 | Plus |
| 3L | 28110227 | 3L | 11110862..11111119 | 691..948 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 11111188..11111362 | 949..1123 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 11111745..11111864 | 1388..1507 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:27 has no hits.
BS12451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:30 Download gff for
BS12451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7638-RA | 1..1491 | 17..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:08 Download gff for
BS12451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7638-RA | 172..1669 | 10..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:03:02 Download gff for
BS12451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7638-RA | 148..1638 | 17..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:30 Download gff for
BS12451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7638-RA | 142..1639 | 10..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:31 Download gff for
BS12451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7638-RA | 148..1638 | 17..1507 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:31 Download gff for
BS12451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11110028..11110404 | 17..394 | 99 | -> | Plus |
| 3L | 11110505..11110800 | 395..690 | 100 | -> | Plus |
| 3L | 11110862..11111119 | 691..948 | 100 | -> | Plus |
| 3L | 11111188..11111362 | 949..1123 | 100 | -> | Plus |
| 3L | 11111425..11111688 | 1124..1387 | 100 | -> | Plus |
| 3L | 11111745..11111864 | 1388..1507 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:03:02 Download gff for
BS12451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11104845..11104964 | 1388..1507 | 100 | | Plus |
| arm_3L | 11103128..11103504 | 17..394 | 99 | -> | Plus |
| arm_3L | 11103605..11103900 | 395..690 | 100 | -> | Plus |
| arm_3L | 11104288..11104462 | 949..1123 | 100 | -> | Plus |
| arm_3L | 11103962..11104219 | 691..948 | 100 | -> | Plus |
| arm_3L | 11104525..11104788 | 1124..1387 | 100 | -> | Plus |
BS12451.pep Sequence
Translation from 16 to 1506
> BS12451.pep
MAVLGAQLVITLVMVSVIQKLSPHYSFAKWILCRTGLYRYLHPTDDELRS
RGGVPKEKPPKGGRNKQANGSGGAAGAQFHIPRSIEVELLTSPVLERDVV
HLRYFTEYQWLLDFSVYTGIVYVVSELFHFYYPLRHEVNLSMVWCLLVIF
FALKLLSSLTVLYFQSEESIGERSMVIVACLVYLLVAMVVLIVDERILET
GLEDAYASFNASASKFLTEQGLPSSGPASKIVVKFFLAMGCGLLGSLFTF
PGLRMAKMHWDSLKYCRGNRLLQVLLNLSFVLPFILVILWIRPISRDYLT
VRVFQGMQQPLLKPHVFETLRLLLVIFVVVVRFALMPIYLQSYLNLAHDK
IMDLRKEAGRITNVEFKQKISSIFYYLCVVTLQFAAPLILCLYLTLMYKS
LGGFSWSGIFRESVVLQHECAASETEGAGVAVSQGDGDFNIIESAQSLQA
SFSSLKNVFSTEVYKGFLGFATWWSYFTLFATSSLGIVYQSYFNKT*
BS12451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7638-PA | 496 | CG7638-PA | 1..496 | 1..496 | 2540 | 100 | Plus |
