BS12452.complete Sequence
782 bp assembled on 2006-11-01
GenBank Submission: FJ637187
> BS12452.complete
GAAGTTATCAGTCGACATGGGCGCCTGTGTATGTCGCATGAACCCCGACA
ACGAGACGATGAGCGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCA
GGCATTGCCATGGGTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGAC
TATCAGGTGGCGGTCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCA
AGCGGGACGAGTTCTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAG
ATCTGGGATGCGCTACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTT
TCAGATGGCCCAGGCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATG
GCTACCTTACAGAATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCC
ATCTACTGTCTGTCATATCCCATAAATATCGTAAAGGAGGAGAACGGGCG
CGACTCGCCTGCCGAATACTCTGAGCCCGTGGATGGCGGCACCGATATCT
TCTTGAAGCTGCGCATATCATCGACCATGACTGATGTTAAACTACCCGTT
TACTCCAAGGACACCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGA
GGGTGTCGACGCCTGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGG
GCGACAAGGTGCCAATCGACGAGTGCAGCATACACCAGGGATATGTGGTG
CAGGTGATTGTCAACACGGAGCACTACAACCACGACAACAGCACGAGTAC
AGCGCACGCCAGCTAGAAGCTTTCTAGACCAT
BS12452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-RB | 750 | CG1172-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG1172-RC | 750 | CG1172-PC | 1..750 | 17..766 | 3750 | 100 | Plus |
CG1172-RA | 750 | CG1172-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-RB | 2443 | CG1172-RB | 260..1009 | 17..766 | 3750 | 100 | Plus |
CG1172-RC | 4339 | CG1172-RC | 260..1009 | 17..766 | 3750 | 100 | Plus |
CG1172-RA | 2017 | CG1172-RA | 260..1009 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5394473..5394727 | 97..351 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 5395522..5395764 | 351..593 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 5396002..5396180 | 588..766 | 895 | 100 | Plus |
3R | 32079331 | 3R | 5394309..5394394 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:42:47 has no hits.
BS12452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:02 Download gff for
BS12452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:56 Download gff for
BS12452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 248..1007 | 11..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:48 Download gff for
BS12452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 276..1025 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:02 Download gff for
BS12452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 248..1007 | 11..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:42 Download gff for
BS12452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 260..1009 | 17..766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:42 Download gff for
BS12452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5396007..5396180 | 593..766 | 100 | | Plus |
3R | 5395523..5395763 | 352..592 | 100 | -> | Plus |
3R | 5394309..5394393 | 17..101 | 100 | -> | Plus |
3R | 5394478..5394727 | 102..351 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:48 Download gff for
BS12452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1221729..1221902 | 593..766 | 100 | | Plus |
arm_3R | 1220031..1220115 | 17..101 | 100 | -> | Plus |
arm_3R | 1220200..1220449 | 102..351 | 100 | -> | Plus |
arm_3R | 1221245..1221485 | 352..592 | 100 | -> | Plus |
BS12452.pep Sequence
Translation from 16 to 765
> BS12452.pep
MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS
DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA
ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE
YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC
CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHAS*
BS12452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-PB | 249 | CG1172-PB | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PC | 249 | CG1172-PC | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PA | 249 | CG1172-PA | 1..249 | 1..249 | 1326 | 100 | Plus |