Clone BS12452 Report

Search the DGRC for BS12452

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG1172-RA
Protein status:BS12452.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12452.complete Sequence

782 bp assembled on 2006-11-01

GenBank Submission: FJ637187

> BS12452.complete
GAAGTTATCAGTCGACATGGGCGCCTGTGTATGTCGCATGAACCCCGACA
ACGAGACGATGAGCGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCA
GGCATTGCCATGGGTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGAC
TATCAGGTGGCGGTCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCA
AGCGGGACGAGTTCTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAG
ATCTGGGATGCGCTACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTT
TCAGATGGCCCAGGCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATG
GCTACCTTACAGAATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCC
ATCTACTGTCTGTCATATCCCATAAATATCGTAAAGGAGGAGAACGGGCG
CGACTCGCCTGCCGAATACTCTGAGCCCGTGGATGGCGGCACCGATATCT
TCTTGAAGCTGCGCATATCATCGACCATGACTGATGTTAAACTACCCGTT
TACTCCAAGGACACCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGA
GGGTGTCGACGCCTGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGG
GCGACAAGGTGCCAATCGACGAGTGCAGCATACACCAGGGATATGTGGTG
CAGGTGATTGTCAACACGGAGCACTACAACCACGACAACAGCACGAGTAC
AGCGCACGCCAGCTAGAAGCTTTCTAGACCAT

BS12452.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-RB 750 CG1172-PB 1..750 17..766 3750 100 Plus
CG1172-RC 750 CG1172-PC 1..750 17..766 3750 100 Plus
CG1172-RA 750 CG1172-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-RB 2443 CG1172-RB 260..1009 17..766 3750 100 Plus
CG1172-RC 4339 CG1172-RC 260..1009 17..766 3750 100 Plus
CG1172-RA 2017 CG1172-RA 260..1009 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5394473..5394727 97..351 1275 100 Plus
3R 32079331 3R 5395522..5395764 351..593 1215 100 Plus
3R 32079331 3R 5396002..5396180 588..766 895 100 Plus
3R 32079331 3R 5394309..5394394 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:42:47 has no hits.

BS12452.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:02 Download gff for BS12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:56 Download gff for BS12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 248..1007 11..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:48 Download gff for BS12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 276..1025 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:02 Download gff for BS12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 248..1007 11..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:42 Download gff for BS12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 260..1009 17..766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:42 Download gff for BS12452.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5396007..5396180 593..766 100   Plus
3R 5395523..5395763 352..592 100 -> Plus
3R 5394309..5394393 17..101 100 -> Plus
3R 5394478..5394727 102..351 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:48 Download gff for BS12452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1221729..1221902 593..766 100   Plus
arm_3R 1220031..1220115 17..101 100 -> Plus
arm_3R 1220200..1220449 102..351 100 -> Plus
arm_3R 1221245..1221485 352..592 100 -> Plus

BS12452.pep Sequence

Translation from 16 to 765

> BS12452.pep
MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS
DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA
ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE
YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC
CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHAS*

BS12452.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-PB 249 CG1172-PB 1..249 1..249 1326 100 Plus
CG1172-PC 249 CG1172-PC 1..249 1..249 1326 100 Plus
CG1172-PA 249 CG1172-PA 1..249 1..249 1326 100 Plus