BS12456.complete Sequence
617 bp assembled on 2006-11-01
GenBank Submission: FJ637189
> BS12456.complete
GAAGTTATCAGTCGACATGGAGGATTCGGAAGCCGCATTTAAACGCCACG
AGGGTGTGGGACCAAAGGTGAAACAGGCCTACGAGGAAGCCATTAAACAA
ATCTTTGCCGACTTGAGCTGCGCAGATCTGCAAGCGTGGGATGCCATTTA
CCAGGAGCACGAGCAATCCGCTCTGGACACCGAAAGCATCGTAGATCGCA
CTCGCAGTCTGATGACCAAGGTTGTGCTCGAAATGAACCGATGCTTTTTC
GCCAGCAACGATGTGCCAAATAAGTTGCAAACTTTGGAAATGCTCAAGGA
ACATTTCGCTGCCTACGAGGGCAAGAAATGGAACGTGAACACTGCAGCAC
CCGATAAACTAACTCGGCCGCTGCGCATGCGATTTTTGGACTTCAGCGTG
GAATTCATGGAGCAGCAACTGGCCTCTCAGGCAAAAGAACTTGAGATTGC
TATGGCCAAGAGCAATGCCAATCGCGAGCGACTCCAACATGTCCATGACA
AGCGCCTGAAATTGACTGTCCAAATGGAGCAGCAATTGTCGCAGTACGAG
AAAGTTAAGACAGAACTTATTAAACTAGGCGAAGCATTGAACGACTTCTG
AAAGCTTTCTAGACCAT
BS12456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnf1a-RA | 585 | CG13434-PA | 1..585 | 17..601 | 2910 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnf1a-RA | 682 | CG13434-RA | 66..650 | 17..601 | 2910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20586803..20587018 | 331..116 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 20586254..20586411 | 601..444 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 20586615..20586730 | 445..330 | 565 | 99.1 | Minus |
| 2R | 25286936 | 2R | 20587073..20587173 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:38 has no hits.
BS12456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:29 Download gff for
BS12456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:51 Download gff for
BS12456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 32..626 | 12..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:15 Download gff for
BS12456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 66..649 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:30 Download gff for
BS12456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 32..626 | 12..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:48 Download gff for
BS12456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1a-RA | 66..649 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:48 Download gff for
BS12456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20586615..20586729 | 331..445 | 99 | <- | Minus |
| 2R | 20586804..20587016 | 118..330 | 100 | <- | Minus |
| 2R | 20587073..20587173 | 17..117 | 100 | | Minus |
| 2R | 20586255..20586409 | 446..600 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:15 Download gff for
BS12456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16473760..16473914 | 446..600 | 100 | <- | Minus |
| arm_2R | 16474120..16474234 | 331..445 | 99 | <- | Minus |
| arm_2R | 16474309..16474521 | 118..330 | 100 | <- | Minus |
| arm_2R | 16474578..16474678 | 17..117 | 100 | | Minus |
BS12456.pep Sequence
Translation from 16 to 600
> BS12456.pep
MEDSEAAFKRHEGVGPKVKQAYEEAIKQIFADLSCADLQAWDAIYQEHEQ
SALDTESIVDRTRSLMTKVVLEMNRCFFASNDVPNKLQTLEMLKEHFAAY
EGKKWNVNTAAPDKLTRPLRMRFLDFSVEFMEQQLASQAKELEIAMAKSN
ANRERLQHVHDKRLKLTVQMEQQLSQYEKVKTELIKLGEALNDF*
BS12456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnf1a-PA | 194 | CG13434-PA | 1..194 | 1..194 | 986 | 100 | Plus |
| Nnf1b-PA | 204 | CG31658-PA | 6..197 | 2..193 | 574 | 57.3 | Plus |
