Clone BS12457 Report

Search the DGRC for BS12457

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptRab21-RA
Protein status:BS12457.pep: gold
Sequenced Size:16

Clone Sequence Records

BS12457.complete Sequence

701 bp assembled on 2006-11-01

GenBank Submission: FJ637190

> BS12457.complete
GAAGTTATCAGTCGACATGAGCTCGAGCAGAGCGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTTAGAAGCTTTCTAGACCA
T

BS12457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 669 CG17515-PC 1..669 17..685 3330 99.9 Plus
Rab21-RD 669 CG17515-PD 1..669 17..685 3330 99.9 Plus
Rab21-RA 570 CG17515-PA 1..570 116..685 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1064 CG17515-RC 159..827 17..685 3330 99.9 Plus
Rab21-RD 1050 CG17515-RD 145..813 17..685 3330 99.9 Plus
Rab21-RA 1077 CG17515-RA 234..840 79..685 3035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012377..23012983 685..79 3035 100 Minus
X 23542271 X 23013041..23013106 82..17 315 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 16:07:08 has no hits.

BS12457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:55 Download gff for BS12457.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..669 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:59 Download gff for BS12457.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 150..827 9..691 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:26 Download gff for BS12457.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..813 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:56 Download gff for BS12457.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 150..827 9..691 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:04 Download gff for BS12457.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..813 17..685 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:04 Download gff for BS12457.complete
Subject Subject Range Query Range Percent Splice Strand
X 23012377..23012981 81..685 100 <- Minus
X 23013043..23013106 17..80 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:26 Download gff for BS12457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414213..22414817 81..685 100 <- Minus
arm_X 22414879..22414942 17..80 98   Minus

BS12457.pep Sequence

Translation from 16 to 684

> BS12457.pep
MSSSRARNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGI*

BS12457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 1..222 1136 99.5 Plus
Rab21-PD 222 CG17515-PD 1..222 1..222 1136 99.5 Plus
Rab21-PA 189 CG17515-PA 1..189 34..222 974 100 Plus
Rab5-PI 219 CG3664-PI 20..183 8..168 384 46.7 Plus
Rab5-PH 219 CG3664-PH 20..183 8..168 384 46.7 Plus