BS12457.complete Sequence
701 bp assembled on 2006-11-01
GenBank Submission: FJ637190
> BS12457.complete
GAAGTTATCAGTCGACATGAGCTCGAGCAGAGCGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTTAGAAGCTTTCTAGACCA
T
BS12457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 669 | CG17515-PC | 1..669 | 17..685 | 3330 | 99.9 | Plus |
Rab21-RD | 669 | CG17515-PD | 1..669 | 17..685 | 3330 | 99.9 | Plus |
Rab21-RA | 570 | CG17515-PA | 1..570 | 116..685 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 1064 | CG17515-RC | 159..827 | 17..685 | 3330 | 99.9 | Plus |
Rab21-RD | 1050 | CG17515-RD | 145..813 | 17..685 | 3330 | 99.9 | Plus |
Rab21-RA | 1077 | CG17515-RA | 234..840 | 79..685 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23012377..23012983 | 685..79 | 3035 | 100 | Minus |
X | 23542271 | X | 23013041..23013106 | 82..17 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:07:08 has no hits.
BS12457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:55 Download gff for
BS12457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RC | 1..669 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:59 Download gff for
BS12457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RC | 150..827 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:26 Download gff for
BS12457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 145..813 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:56 Download gff for
BS12457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RC | 150..827 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:04 Download gff for
BS12457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 145..813 | 17..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:04 Download gff for
BS12457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23012377..23012981 | 81..685 | 100 | <- | Minus |
X | 23013043..23013106 | 17..80 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:26 Download gff for
BS12457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22414213..22414817 | 81..685 | 100 | <- | Minus |
arm_X | 22414879..22414942 | 17..80 | 98 | | Minus |
BS12457.pep Sequence
Translation from 16 to 684
> BS12457.pep
MSSSRARNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGI*
BS12457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-PC | 222 | CG17515-PC | 1..222 | 1..222 | 1136 | 99.5 | Plus |
Rab21-PD | 222 | CG17515-PD | 1..222 | 1..222 | 1136 | 99.5 | Plus |
Rab21-PA | 189 | CG17515-PA | 1..189 | 34..222 | 974 | 100 | Plus |
Rab5-PI | 219 | CG3664-PI | 20..183 | 8..168 | 384 | 46.7 | Plus |
Rab5-PH | 219 | CG3664-PH | 20..183 | 8..168 | 384 | 46.7 | Plus |