Clone BS12459 Report

Search the DGRC for BS12459

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:124
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptDen1-RA
Protein status:BS12459.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12459.complete Sequence

680 bp assembled on 2007-10-17

GenBank Submission: FJ637191

> BS12459.complete
GAAGTTATCAGTCGACATGGGCAGCAACTCCAAGGCAGACCCCATCTCGC
TGACCTTCCACGACTCCTGCCTGCGGATGTCCGACGTCCAGTTGCTCCAC
GGCCCGCACTGGCTGAACGACCAGATCCTGAGCTTCTACTACGAATACCT
GGCCCACATGAAGTACAAGACCAATGCGGATCTGCACTTCATTGCGCCGG
AGATTACGCAGTGTATGAAGTACATGGGCGACCAGGAGCTGAAGCAGCTT
CTCGACCAGAGCAACACCACTGGCAAGCCCTTTATCTTCTTCGCGCTGAA
CGACAACGAAACCACCGATGCTGGTGGCAGCCACTGGTCACTGTTGGTCT
TCTCGCGTCCGGAGAAGACCTTCTATCACTTCGATTCGTATGGGAACAAC
AACACGGGCAACTCCCTGGAGCTGATGAACAAGATCAAGGACCTGCTTGG
CGTCCGAATGGCCAAATTCCGGCCCATGCGCTGCCTACAGCAGGCGAACG
GCTACGACTGTGGCATCCATGTTATCTGCATGACCGACCACATTGCCGAT
TACCTAAACAGATACGAGGTGATCGACGGACTGCCGTCGCTGCACATCGA
CACCGTGAAGGCGAAGCGCACCGAGCTACTGAAACTCATCCTGTCGCTGG
GCGGCAAGGGCTAGAAGCTTTCTAGACCAT

BS12459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-RC 750 CG8493-PC 103..750 17..664 3240 100 Plus
Den1-RA 648 CG8493-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-RC 1161 CG8493-RC 223..875 17..669 3250 99.8 Plus
Den1-RA 1257 CG8493-RA 319..971 17..669 3250 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12338606..12339258 17..669 3250 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 16:48:01 has no hits.

BS12459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:59 Download gff for BS12459.complete
Subject Subject Range Query Range Percent Splice Strand
CG8493-RB 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:56 Download gff for BS12459.complete
Subject Subject Range Query Range Percent Splice Strand
CG8493-RB 141..799 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:45 Download gff for BS12459.complete
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..966 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:01 Download gff for BS12459.complete
Subject Subject Range Query Range Percent Splice Strand
CG8493-RB 141..788 17..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:16 Download gff for BS12459.complete
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..966 17..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:16 Download gff for BS12459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12338606..12339253 17..664 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:45 Download gff for BS12459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8226111..8226758 17..664 100   Plus

BS12459.pep Sequence

Translation from 16 to 663

> BS12459.pep
MGSNSKADPISLTFHDSCLRMSDVQLLHGPHWLNDQILSFYYEYLAHMKY
KTNADLHFIAPEITQCMKYMGDQELKQLLDQSNTTGKPFIFFALNDNETT
DAGGSHWSLLVFSRPEKTFYHFDSYGNNNTGNSLELMNKIKDLLGVRMAK
FRPMRCLQQANGYDCGIHVICMTDHIADYLNRYEVIDGLPSLHIDTVKAK
RTELLKLILSLGGKG*

BS12459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-PA 215 CG8493-PA 1..215 1..215 1156 100 Plus
Den1-PC 249 CG8493-PC 35..249 1..215 1156 100 Plus
CG1503-PB 307 CG1503-PB 88..299 10..213 324 35.8 Plus
CG1503-PA 307 CG1503-PA 88..299 10..213 324 35.8 Plus