BS12461.complete Sequence
1370 bp assembled on 2006-11-01
GenBank Submission: FJ637192
> BS12461.complete
GAAGTTATCAGTCGACATGACGCAAAAAACTATGTTGCTGCAGTTGCTGC
TCCTTGTGGCAGCCGTAGCAGCCAGCTTGGCCAACGAGTTGCCCTCCAAT
CTCACACTGCTGGATGCCAACGAGATACCGCAACGGTACGATGAGGCGCA
GCTCTGGAGGATCTACAACATCTCGGAGGCGATGCAAAAGCGTGTGCCCG
TGGGCCAAATGCTGGAGCAGAAGTTCGGTGGCAATATCTGGAAGGAGAAC
TCCAAGTTTCTGGACATCTCCATTGCCAGGGATCAACTGAAGGCCGCCCG
CAGCTTTCTATCCGCCCATCGTCTGGATCCCCAGATTCTCTCCCACAACA
TTCAATCCATGATCGACGAGGAGCTTCTCGAAGGCATTCAGTCCAGTTCG
TTTGGTCACGGAAGGAGAACGAAAAAGGCCGCCAGGAGCAGCATGCACTG
GAAGGACTATCACGATCTGGAGACCATCTATAGCTTTATGCGGGAGATCC
GCACCAAATTCCCCAACATCGTGCGACTATACACCATTGGCCAAACGGCC
GAGGGACGCGATCTGAAAGTGCTTAGAATCTCGGAGAATCCCCGCGAGAA
CAAGAAGGTGTGGATCGACGGCGGCATCCACGCCCGCGAATGGATCAGCC
CCGCGACGGTGACCTTCATCCTGTACCAGCTGATGTCCGACTGGGAGAAC
CAGCCGGCGCACATTCGCGGCCTCACCTGGTACATAATGCCAGTGATGAA
TCCCGATGGCTACGAGTACAGTCGAACAACGAATCGCCTGTGGCGCAAGA
ATCGCTCGCCATCGCGTCGCGCCCAGTGCAGCGGTGTGGATCTCAACCGT
AACTTCGACATCGGCTGGAATGGCTATGGCTCGTCGACGAATCCGTGCAG
TGATACGTACCGCGGATCCGCGCCAGCTTCGGAGCGGGAAACGCGAGCGG
TGGCCGAGTTTTTGGCCAAGCGGAAGTACAATCTGGAATCGTATTTGACC
TTCCACAGCTACGGACAGATGATTGTTTATCCGTGGGCCTACAAGGCCGT
CAAGGTCAAGGATGCCAGTGTCCTGCAGCGAGTGAGCAGTTTGGCCGCGG
AGCGAATCCTCCAGAAGACGGGCACTTCGTACAGGGCAGCGGTCACCCAT
GAAGTTTTGGGAATCGCAGGCGGTGGCTCCGATGACTGGAGCCGCGCCGC
GCTTGGTGTCAAATATGTGTACACCATCGAGCTGAGGGATCGTGGAGCCT
ACGGATTTGTCCTGCCGCCGCGTTTCATCAAGGACACAGCTCTCGAGGGC
TGGACAGTGGTCGAGACGGTGGCGCAGGCTATTGGCCCCAGCTCGTCCGG
TTGAAAGCTTTCTAGACCAT
BS12461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3097-RA | 1338 | CG3097-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3097-RA | 1983 | CG3097-RA | 410..1748 | 17..1355 | 6695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5766090..5766871 | 1355..574 | 3910 | 100 | Minus |
| X | 23542271 | X | 5767289..5767694 | 422..17 | 2030 | 100 | Minus |
| X | 23542271 | X | 5767074..5767227 | 576..423 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:02:09 has no hits.
BS12461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:44:31 Download gff for
BS12461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3097-RA | 1..1338 | 17..1354 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:19:10 Download gff for
BS12461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3097-RA | 404..1750 | 13..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:58 Download gff for
BS12461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3097-RA | 410..1746 | 17..1353 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:44:31 Download gff for
BS12461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3097-RA | 404..1750 | 13..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:41 Download gff for
BS12461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3097-RA | 410..1746 | 17..1353 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:41 Download gff for
BS12461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5767074..5767227 | 423..576 | 100 | <- | Minus |
| X | 5766092..5766868 | 577..1353 | 100 | <- | Minus |
| X | 5767289..5767694 | 17..422 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:58 Download gff for
BS12461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5660125..5660901 | 577..1353 | 100 | <- | Minus |
| arm_X | 5661107..5661260 | 423..576 | 100 | <- | Minus |
| arm_X | 5661322..5661727 | 17..422 | 100 | | Minus |
BS12461.pep Sequence
Translation from 16 to 1353
> BS12461.pep
MTQKTMLLQLLLLVAAVAASLANELPSNLTLLDANEIPQRYDEAQLWRIY
NISEAMQKRVPVGQMLEQKFGGNIWKENSKFLDISIARDQLKAARSFLSA
HRLDPQILSHNIQSMIDEELLEGIQSSSFGHGRRTKKAARSSMHWKDYHD
LETIYSFMREIRTKFPNIVRLYTIGQTAEGRDLKVLRISENPRENKKVWI
DGGIHAREWISPATVTFILYQLMSDWENQPAHIRGLTWYIMPVMNPDGYE
YSRTTNRLWRKNRSPSRRAQCSGVDLNRNFDIGWNGYGSSTNPCSDTYRG
SAPASERETRAVAEFLAKRKYNLESYLTFHSYGQMIVYPWAYKAVKVKDA
SVLQRVSSLAAERILQKTGTSYRAAVTHEVLGIAGGGSDDWSRAALGVKY
VYTIELRDRGAYGFVLPPRFIKDTALEGWTVVETVAQAIGPSSSG*
BS12461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3097-PA | 445 | CG3097-PA | 1..445 | 1..445 | 2318 | 100 | Plus |
| CG3108-PA | 1132 | CG3108-PA | 693..1112 | 17..439 | 854 | 42.8 | Plus |
| CG42264-PA | 634 | CG42264-PA | 218..633 | 39..439 | 617 | 32.9 | Plus |
| CG42264-PB | 521 | CG42264-PB | 77..520 | 32..439 | 611 | 33.2 | Plus |
| CG18585-PB | 422 | CG18585-PB | 3..395 | 6..418 | 586 | 32.7 | Plus |
