BS12468.complete Sequence
2036 bp assembled on 2009-12-07
GenBank Submission: KX801058
> BS12468.complete
GAAGTTATCAGTCGACATGTATCGCATCAGTCCAATTGGACGCAAATCGA
ACTTCCACTCGCGCGAAAAATGTCTGATTGGACTCGTCCTGGTAACGTTG
TGCTTCCTCTGCTTCGGCGGCATCTTCCTTCTGCCGGACAATTTCGGCAG
CGATCGTGTCCTGCGCGTCTACAAGCACTTCCGAAAGGCCGGACCGGAGA
TCTTTATCCCAGCCCCGCCCCTCGCCGCACACGCCCCCCATCGCAGCGAG
GATCCACATTTCATTGGCGATCGCCAACGTTTGGAGCAAAAGATTCGCGC
CGAATTGGGCGATATGCTCGATGAGCCACCGGCTGCGGGTGGAGGCGAAC
CTGGACAATTCCAGGTGCTCGCCCAACAGGCTCAGGCTCCAGCACCCGTC
GCCGCTCTGGCGGATCAGCCGCTGGATCAGGACGAGGGACACGCCGCCAT
TCCCGTTCTGGCCGCCCCAGTTCAGGGGGACAATGCCGCCAGCCAGGCCT
CGTCCCATCCACAAAGTTCCGCCCAGCAGCACAACCAGCAGCAACCACAA
CTGCCATTGGGTGGCGGTGGCAATGATCAGGCGCCGGACACACTGGACGC
CACACTGGAAGAACGGCGTCAGAAGGTCAAAGAGATGATGGAACATGCGT
GGCACAATTACAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCTT
TCGCAGCGACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTGC
TACAATCGTCGACGGTCTGGATACCCTGTACATTATGGGACTGGAGAAGG
AATATCGCGAGGGTCGCGATTGGATCGAGCGAAAATTCTCACTGGACAAT
ATCAGCGCAGAGTTGAGTGTTTTCGAAACGAACATTCGTTTTGTTGGCGG
CATGCTGACGCTGTACGCCTTTACGGGCGATCCACTGTACAAGGAGAAGG
CCCAGCACGTTGCCGACAAGCTGCTGCCCGCCTTCCAAACACCAACGGGT
ATTCCCTACGCGCTGGTCAACACCAAGACCGGTGTGGCCAAGAACTACGG
CTGGGCATCCGGCGGCAGTTCTATCCTATCCGAATTTGGCACACTGCATC
TGGAATTTGCCTATCTGAGCGACATTACCGGGAATCCACTGTATCGGGAA
CGAGTCCAGACCATTCGCCAAGTGCTCAAGGAGATCGAGAAACCAAAGGG
CCTCTATCCCAACTTCCTTAATCCCAAGACAGGCAAATGGGGGCAACTTC
ACATGTCATTGGGCGCTCTGGGCGACAGCTACTACGAGTACTTGCTGAAG
GCCTGGCTGCAATCCGGCCAAACGGATGAGGAAGCCCGCGAGATGTTCGA
CGAGGCAATGCTGGCCATTCTGGATAAGATGGTCCGCACAAGTCCCGGCG
GACTGACATACGTCTCTGATCTCAAGTTCGACAGGCTGGAGCATAAGATG
GACCATTTGGCTTGCTTCTCGGGTGGCCTCTTCGCTTTGGGAGCGGCTAC
ACGTCAAAATGACTATACGGACAAGTACATGGAGGTGGGCAAGGGCATTA
CGAATACCTGCCACGAGAGCTACATCAGAGCACCCACTCAGCTGGGACCC
GAGGCCTTTAGATTCAGCGAAGCTGTGGAGGCGCGAGCGCTGAGATCGCA
GGAGAAGTACTACATTCTACGGCCAGAGACTTTCGAGAGCTACTTTGTGC
TGTGGCGACTCACGCACGACCAGAAATACCGCGACTGGGGCTGGGAGGCG
GTCCTCGCCCTGGAGAAGCACTGCCGCACGGCGCACGGATATTGTGGCCT
GCGCAACGTCTACCAGCAGGAGCCGCAAAAGGACGACGTTCAGCAAAGCT
TCTTCCTCGCCGAAACGCTTAAGTACCTGTACTTGCTGTTCTCGGACGAT
TCGGTGCTGCCGCTGGACGAATGGGTGTTCAACACGGAGGCCCATCCGCT
GCCGATCAAGGGTGCGAATGCGTACTATAGACAGGCGCCCGTAACGCTTC
CGGTTTCGAACGCATCGTAAAAGCTTTCTAGACCAT
BS12468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RO | 2004 | CG42275-PO | 1..2004 | 17..2020 | 10005 | 100 | Plus |
| alpha-Man-I-RN | 2004 | CG42275-PN | 1..2004 | 17..2020 | 10005 | 100 | Plus |
| alpha-Man-I-RM | 2004 | CG42275-PM | 1..2004 | 17..2020 | 10005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RO | 3808 | CG42275-RO | 303..2308 | 16..2021 | 10015 | 100 | Plus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 348..2353 | 16..2021 | 10015 | 100 | Plus |
| alpha-Man-I-RM | 3961 | CG42275-RM | 456..2461 | 16..2021 | 10015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10323566..10324184 | 634..16 | 3095 | 100 | Minus |
| X | 23542271 | X | 10278579..10279193 | 1247..633 | 3075 | 100 | Minus |
| X | 23542271 | X | 10277761..10278027 | 1873..1607 | 1320 | 99.6 | Minus |
| X | 23542271 | X | 10278291..10278517 | 1474..1248 | 1135 | 100 | Minus |
| X | 23542271 | X | 10277555..10277704 | 2021..1872 | 750 | 100 | Minus |
| X | 23542271 | X | 10278092..10278231 | 1611..1472 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:07:36 has no hits.
BS12468.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:14 Download gff for
BS12468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RE | 456..2457 | 17..2018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:24 Download gff for
BS12468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 456..2457 | 17..2018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:07 Download gff for
BS12468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RE | 456..2457 | 17..2018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:19 Download gff for
BS12468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 457..2458 | 17..2018 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:19 Download gff for
BS12468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10277558..10277702 | 1874..2018 | 100 | <- | Minus |
| X | 10277761..10278022 | 1612..1873 | 99 | <- | Minus |
| X | 10278092..10278230 | 1473..1611 | 100 | <- | Minus |
| X | 10278293..10278517 | 1248..1472 | 100 | <- | Minus |
| X | 10278579..10279191 | 635..1247 | 100 | <- | Minus |
| X | 10323566..10324183 | 17..634 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:24 Download gff for
BS12468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10171591..10171735 | 1874..2018 | 100 | <- | Minus |
| arm_X | 10171794..10172055 | 1612..1873 | 99 | <- | Minus |
| arm_X | 10172125..10172263 | 1473..1611 | 100 | <- | Minus |
| arm_X | 10172326..10172550 | 1248..1472 | 100 | <- | Minus |
| arm_X | 10172612..10173224 | 635..1247 | 100 | <- | Minus |
| arm_X | 10217599..10218216 | 17..634 | 100 | | Minus |
BS12468.pep Sequence
Translation from 16 to 2019
> BS12468.pep
MYRISPIGRKSNFHSREKCLIGLVLVTLCFLCFGGIFLLPDNFGSDRVLR
VYKHFRKAGPEIFIPAPPLAAHAPHRSEDPHFIGDRQRLEQKIRAELGDM
LDEPPAAGGGEPGQFQVLAQQAQAPAPVAALADQPLDQDEGHAAIPVLAA
PVQGDNAASQASSHPQSSAQQHNQQQPQLPLGGGGNDQAPDTLDATLEER
RQKVKEMMEHAWHNYKLYAWGKNELRPLSQRPHSASIFGSYDLGATIVDG
LDTLYIMGLEKEYREGRDWIERKFSLDNISAELSVFETNIRFVGGMLTLY
AFTGDPLYKEKAQHVADKLLPAFQTPTGIPYALVNTKTGVAKNYGWASGG
SSILSEFGTLHLEFAYLSDITGNPLYRERVQTIRQVLKEIEKPKGLYPNF
LNPKTGKWGQLHMSLGALGDSYYEYLLKAWLQSGQTDEEAREMFDEAMLA
ILDKMVRTSPGGLTYVSDLKFDRLEHKMDHLACFSGGLFALGAATRQNDY
TDKYMEVGKGITNTCHESYIRAPTQLGPEAFRFSEAVEARALRSQEKYYI
LRPETFESYFVLWRLTHDQKYRDWGWEAVLALEKHCRTAHGYCGLRNVYQ
QEPQKDDVQQSFFLAETLKYLYLLFSDDSVLPLDEWVFNTEAHPLPIKGA
NAYYRQAPVTLPVSNAS*
BS12468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-PO | 667 | CG42275-PO | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PN | 667 | CG42275-PN | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PM | 667 | CG42275-PM | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PL | 667 | CG42275-PL | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PH | 667 | CG32684-PG | 1..667 | 1..667 | 3541 | 100 | Plus |
